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Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture.
Gaasterland T, Sensen CW. Gaasterland T, et al. Biochimie. 1996;78(5):302-10. doi: 10.1016/0300-9084(96)84761-4. Biochimie. 1996. PMID: 8905148
MAGPIE: automated genome interpretation.
Gaasterland T, Sensen CW. Gaasterland T, et al. Trends Genet. 1996 Feb;12(2):76-8. doi: 10.1016/0168-9525(96)81406-5. Trends Genet. 1996. PMID: 8851977 No abstract available.
Assigning function to CDS through qualified query answering: beyond alignment and motifs.
Gaasterland T, Maltsev N, Lobo J, Chen GH. Gaasterland T, et al. Proc Int Conf Intell Syst Mol Biol. 1994;2:130-7. Proc Int Conf Intell Syst Mol Biol. 1994. PMID: 7584382
Reconstruction of metabolic networks using incomplete information.
Gaasterland T, Selkov E. Gaasterland T, et al. Proc Int Conf Intell Syst Mol Biol. 1995;3:127-35. Proc Int Conf Intell Syst Mol Biol. 1995. PMID: 7584429
This paper describes an approach that uses methods for automated sequence analysis (Gaasterland et al. August 1994) and multiple databases accessed through an object+attribute view of the data (Baehr et al. 1992), together with metabolic pathways, reaction equations, and c …
This paper describes an approach that uses methods for automated sequence analysis (Gaasterland et al. August 1994) and multiple data …
Constructing multigenome views of whole microbial genomes.
Gaasterland T, Ragan MA. Gaasterland T, et al. Microb Comp Genomics. 1998;3(3):177-92. doi: 10.1089/omi.1.1998.3.177. Microb Comp Genomics. 1998. PMID: 9775388
Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes.
Gaasterland T, Ragan MA. Gaasterland T, et al. Microb Comp Genomics. 1998;3(4):199-217. doi: 10.1089/omi.1.1998.3.199. Microb Comp Genomics. 1998. PMID: 10027190
Structural genomics taking shape.
Gaasterland T. Gaasterland T. Trends Genet. 1998 Apr;14(4):135. doi: 10.1016/s0168-9525(98)01430-9. Trends Genet. 1998. PMID: 9594659 No abstract available.
Structural genomics: bioinformatics in the driver's seat.
Gaasterland T. Gaasterland T. Nat Biotechnol. 1998 Jul;16(7):625-7. doi: 10.1038/nbt0798-625. Nat Biotechnol. 1998. PMID: 9661193 No abstract available.
Characterizing the relationship between protein-fusion and gene co-expression.
Gunther CS, Gaasterland T. Gunther CS, et al. Among authors: gaasterland t. Genome Inform. 2001;12:34-43. Genome Inform. 2001. PMID: 11791222
Whole-genome analysis: annotations and updates.
Gaasterland T, Oprea M. Gaasterland T, et al. Curr Opin Struct Biol. 2001 Jun;11(3):377-81. doi: 10.1016/s0959-440x(00)00213-x. Curr Opin Struct Biol. 2001. PMID: 11406390 Review.
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