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231 results
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MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score.
Pryszcz LP, Huerta-Cepas J, Gabaldón T. Pryszcz LP, et al. Among authors: gabaldon t. Nucleic Acids Res. 2011 Mar;39(5):e32. doi: 10.1093/nar/gkq953. Epub 2010 Dec 11. Nucleic Acids Res. 2011. PMID: 21149260 Free PMC article.
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease.
Schlüter A, Fourcade S, Domènech-Estévez E, Gabaldón T, Huerta-Cepas J, Berthommier G, Ripp R, Wanders RJ, Poch O, Pujol A. Schlüter A, et al. Among authors: gabaldon t. Nucleic Acids Res. 2007 Jan;35(Database issue):D815-22. doi: 10.1093/nar/gkl935. Epub 2006 Nov 28. Nucleic Acids Res. 2007. PMID: 17135190 Free PMC article.
Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.
Tárraga J, Medina I, Arbiza L, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H. Tárraga J, et al. Among authors: gabaldon t. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W38-42. doi: 10.1093/nar/gkm224. Epub 2007 Apr 22. Nucleic Acids Res. 2007. PMID: 17452346 Free PMC article.
The human phylome.
Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T. Huerta-Cepas J, et al. Among authors: gabaldon t. Genome Biol. 2007;8(6):R109. doi: 10.1186/gb-2007-8-6-r109. Genome Biol. 2007. PMID: 17567924 Free PMC article.
PhylomeDB: a database for genome-wide collections of gene phylogenies.
Huerta-Cepas J, Bueno A, Dopazo J, Gabaldón T. Huerta-Cepas J, et al. Among authors: gabaldon t. Nucleic Acids Res. 2008 Jan;36(Database issue):D491-6. doi: 10.1093/nar/gkm899. Epub 2007 Oct 25. Nucleic Acids Res. 2008. PMID: 17962297 Free PMC article.
Comparative genomics-based prediction of protein function.
Gabaldón T. Gabaldón T. Methods Mol Biol. 2008;439:387-401. doi: 10.1007/978-1-59745-188-8_26. Methods Mol Biol. 2008. PMID: 18370117
Large-scale assignment of orthology: back to phylogenetics?
Gabaldón T. Gabaldón T. Genome Biol. 2008 Oct 30;9(10):235. doi: 10.1186/gb-2008-9-10-235. Genome Biol. 2008. PMID: 18983710 Free PMC article. Review.
The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome.
Marcet-Houben M, Gabaldón T. Marcet-Houben M, et al. Among authors: gabaldon t. PLoS One. 2009;4(2):e4357. doi: 10.1371/journal.pone.0004357. Epub 2009 Feb 3. PLoS One. 2009. PMID: 19190756 Free PMC article.
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.
Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. Capella-Gutiérrez S, et al. Among authors: gabaldon t. Bioinformatics. 2009 Aug 1;25(15):1972-3. doi: 10.1093/bioinformatics/btp348. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505945 Free PMC article.
PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome.
Schlüter A, Real-Chicharro A, Gabaldón T, Sánchez-Jiménez F, Pujol A. Schlüter A, et al. Among authors: gabaldon t. Nucleic Acids Res. 2010 Jan;38(Database issue):D800-5. doi: 10.1093/nar/gkp935. Epub 2009 Nov 5. Nucleic Acids Res. 2010. PMID: 19892824 Free PMC article.
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