Gao X - Search Results

1

A deep learning framework to predict binding preference of RNA constituents on protein surface.

Lam JH, Li Y, Zhu L, Umarov R, Jiang H, Héliou A, Sheong FK, Liu T, Long Y, Li Y, Fang L, Altman RB, Chen W, Huang X, Gao X. Lam JH, et al. Among authors: gao x. Nat Commun. 2019 Oct 30;10(1):4941. doi: 10.1038/s41467-019-12920-0. Nat Commun. 2019. PMID: 31666519 Free PMC article.

2

Understanding the core of RNA interference: The dynamic aspects of Argonaute-mediated processes.

Zhu L, Jiang H, Sheong FK, Cui X, Wang Y, Gao X, Huang X. Zhu L, et al. Among authors: gao x. Prog Biophys Mol Biol. 2017 Sep;128:39-46. doi: 10.1016/j.pbiomolbio.2016.09.008. Epub 2016 Sep 30. Prog Biophys Mol Biol. 2017. PMID: 27697475 Review.

3

Conformational Dynamics of apo-GlnBP Revealed by Experimental and Computational Analysis.

Feng Y, Zhang L, Wu S, Liu Z, Gao X, Zhang X, Liu M, Liu J, Huang X, Wang W. Feng Y, et al. Among authors: gao x. Angew Chem Int Ed Engl. 2016 Nov 2;55(45):13990-13994. doi: 10.1002/anie.201606613. Epub 2016 Oct 12. Angew Chem Int Ed Engl. 2016. PMID: 27730716

4

Elucidating Mechanisms of Molecular Recognition Between Human Argonaute and miRNA Using Computational Approaches.

Jiang H, Zhu L, Héliou A, Gao X, Bernauer J, Huang X. Jiang H, et al. Among authors: gao x. Methods Mol Biol. 2017;1517:251-275. doi: 10.1007/978-1-4939-6563-2_18. Methods Mol Biol. 2017. PMID: 27924488

5

SBOLme: a Repository of SBOL Parts for Metabolic Engineering.

Kuwahara H, Cui X, Umarov R, Grünberg R, Myers CJ, Gao X. Kuwahara H, et al. Among authors: gao x. ACS Synth Biol. 2017 Apr 21;6(4):732-736. doi: 10.1021/acssynbio.6b00278. Epub 2017 Jan 25. ACS Synth Biol. 2017. PMID: 28076956

6

Maltose-binding protein effectively stabilizes the partially closed conformation of the ATP-binding cassette transporter MalFGK₂.

Weng J, Gu S, Gao X, Huang X, Wang W. Weng J, et al. Among authors: gao x. Phys Chem Chem Phys. 2017 Apr 5;19(14):9366-9373. doi: 10.1039/c6cp07943a. Phys Chem Chem Phys. 2017. PMID: 28267156

7

The Dynamic Multisite Interactions between Two Intrinsically Disordered Proteins.

Wu S, Wang D, Liu J, Feng Y, Weng J, Li Y, Gao X, Liu J, Wang W. Wu S, et al. Among authors: gao x. Angew Chem Int Ed Engl. 2017 Jun 19;56(26):7515-7519. doi: 10.1002/anie.201701883. Epub 2017 May 24. Angew Chem Int Ed Engl. 2017. PMID: 28493424

8

Sequence2Vec: a novel embedding approach for modeling transcription factor binding affinity landscape.

Dai H, Umarov R, Kuwahara H, Li Y, Song L, Gao X. Dai H, et al. Among authors: gao x. Bioinformatics. 2017 Nov 15;33(22):3575-3583. doi: 10.1093/bioinformatics/btx480. Bioinformatics. 2017. PMID: 28961686 Free PMC article.

9

DEEPre: sequence-based enzyme EC number prediction by deep learning.

Li Y, Wang S, Umarov R, Xie B, Fan M, Li L, Gao X. Li Y, et al. Among authors: gao x. Bioinformatics. 2018 Mar 1;34(5):760-769. doi: 10.1093/bioinformatics/btx680. Bioinformatics. 2018. PMID: 29069344 Free PMC article.

10

DeepSimulator: a deep simulator for Nanopore sequencing.

Li Y, Han R, Bi C, Li M, Wang S, Gao X. Li Y, et al. Among authors: gao x. Bioinformatics. 2018 Sep 1;34(17):2899-2908. doi: 10.1093/bioinformatics/bty223. Bioinformatics. 2018. PMID: 29659695 Free PMC article.

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