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A comparison of RNA folding measures.
Freyhult E, Gardner PP, Moulton V. Freyhult E, et al. Among authors: gardner pp. BMC Bioinformatics. 2005 Oct 3;6:241. doi: 10.1186/1471-2105-6-241. BMC Bioinformatics. 2005. PMID: 16202126 Free PMC article.
Predicting RNA structure using mutual information.
Freyhult E, Moulton V, Gardner P. Freyhult E, et al. Appl Bioinformatics. 2005;4(1):53-9. doi: 10.2165/00822942-200504010-00006. Appl Bioinformatics. 2005. PMID: 16000013
Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum.
Mourier T, Carret C, Kyes S, Christodoulou Z, Gardner PP, Jeffares DC, Pinches R, Barrell B, Berriman M, Griffiths-Jones S, Ivens A, Newbold C, Pain A. Mourier T, et al. Among authors: gardner pp. Genome Res. 2008 Feb;18(2):281-92. doi: 10.1101/gr.6836108. Epub 2007 Dec 20. Genome Res. 2008. PMID: 18096748 Free PMC article.
An introduction to RNA databases.
Hoeppner MP, Barquist LE, Gardner PP. Hoeppner MP, et al. Among authors: gardner pp. Methods Mol Biol. 2014;1097:107-23. doi: 10.1007/978-1-62703-709-9_6. Methods Mol Biol. 2014. PMID: 24639157 Review.
Rfam 12.0: updates to the RNA families database.
Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. Nawrocki EP, et al. Among authors: gardner pp. Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11. Nucleic Acids Res. 2015. PMID: 25392425 Free PMC article.
79 results