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BamTools: a C++ API and toolkit for analyzing and managing BAM files.
Barnett DW, Garrison EK, Quinlan AR, Strömberg MP, Marth GT. Barnett DW, et al. Among authors: garrison ek. Bioinformatics. 2011 Jun 15;27(12):1691-2. doi: 10.1093/bioinformatics/btr174. Epub 2011 Apr 14. Bioinformatics. 2011. PMID: 21493652 Free PMC article.
Unbiased pangenome graphs.
Garrison E, Guarracino A. Garrison E, et al. Bioinformatics. 2023 Jan 1;39(1):btac743. doi: 10.1093/bioinformatics/btac743. Bioinformatics. 2023. PMID: 36448683 Free PMC article.
Optimal gap-affine alignment in O(s) space.
Marco-Sola S, Eizenga JM, Guarracino A, Paten B, Garrison E, Moreto M. Marco-Sola S, et al. Bioinformatics. 2023 Feb 3;39(2):btad074. doi: 10.1093/bioinformatics/btad074. Bioinformatics. 2023. PMID: 36749013 Free PMC article.