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Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates.
Kvitek DJ, Will JL, Gasch AP. Kvitek DJ, et al. Among authors: gasch ap. PLoS Genet. 2008 Oct;4(10):e1000223. doi: 10.1371/journal.pgen.1000223. Epub 2008 Oct 17. PLoS Genet. 2008. PMID: 18927628 Free PMC article.
Genomic expression programs in the response of yeast cells to environmental changes.
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO. Gasch AP, et al. Mol Biol Cell. 2000 Dec;11(12):4241-57. doi: 10.1091/mbc.11.12.4241. Mol Biol Cell. 2000. PMID: 11102521 Free PMC article.
Yeast genomic expression studies using DNA microarrays.
Gasch AP. Gasch AP. Methods Enzymol. 2002;350:393-414. doi: 10.1016/s0076-6879(02)50976-9. Methods Enzymol. 2002. PMID: 12073326
Comparative genomics of the environmental stress response in ascomycete fungi.
Gasch AP. Gasch AP. Yeast. 2007 Nov;24(11):961-76. doi: 10.1002/yea.1512. Yeast. 2007. PMID: 17605132 Review.
Stress-activated genomic expression changes serve a preparative role for impending stress in yeast.
Berry DB, Gasch AP. Berry DB, et al. Among authors: gasch ap. Mol Biol Cell. 2008 Nov;19(11):4580-7. doi: 10.1091/mbc.e07-07-0680. Epub 2008 Aug 27. Mol Biol Cell. 2008. PMID: 18753408 Free PMC article.
The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress.
Alejandro-Osorio AL, Huebert DJ, Porcaro DT, Sonntag ME, Nillasithanukroh S, Will JL, Gasch AP. Alejandro-Osorio AL, et al. Among authors: gasch ap. Genome Biol. 2009;10(5):R57. doi: 10.1186/gb-2009-10-5-r57. Epub 2009 May 26. Genome Biol. 2009. PMID: 19470158 Free PMC article.
A non-homogeneous hidden-state model on first order differences for automatic detection of nucleosome positions.
Kuan PF, Huebert D, Gasch A, Keles S. Kuan PF, et al. Among authors: gasch a. Stat Appl Genet Mol Biol. 2009;8(1):Article29. doi: 10.2202/1544-6115.1454. Epub 2009 Jun 19. Stat Appl Genet Mol Biol. 2009. PMID: 19572828 Free PMC article. Review.
From elements to modules: regulatory evolution in Ascomycota fungi.
Wohlbach DJ, Thompson DA, Gasch AP, Regev A. Wohlbach DJ, et al. Among authors: gasch ap. Curr Opin Genet Dev. 2009 Dec;19(6):571-8. doi: 10.1016/j.gde.2009.09.007. Epub 2009 Oct 29. Curr Opin Genet Dev. 2009. PMID: 19879128 Free PMC article. Review.
Transient genotype-by-environment interactions following environmental shock provide a source of expression variation for essential genes.
Eng KH, Kvitek DJ, Keles S, Gasch AP. Eng KH, et al. Among authors: gasch ap. Genetics. 2010 Feb;184(2):587-93. doi: 10.1534/genetics.109.107268. Epub 2009 Dec 4. Genetics. 2010. PMID: 19966067 Free PMC article.
Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations.
Will JL, Kim HS, Clarke J, Painter JC, Fay JC, Gasch AP. Will JL, et al. Among authors: gasch ap. PLoS Genet. 2010 Apr 1;6(4):e1000893. doi: 10.1371/journal.pgen.1000893. PLoS Genet. 2010. PMID: 20369021 Free PMC article.
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