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SWISS-PROT: connecting biomolecular knowledge via a protein database.
Gasteiger E, Jung E, Bairoch A. Gasteiger E, et al. Curr Issues Mol Biol. 2001 Jul;3(3):47-55. Curr Issues Mol Biol. 2001. PMID: 11488411 Review.
Detailed peptide characterization using PEPTIDEMASS--a World-Wide-Web-accessible tool.
Wilkins MR, Lindskog I, Gasteiger E, Bairoch A, Sanchez JC, Hochstrasser DF, Appel RD. Wilkins MR, et al. Among authors: gasteiger e. Electrophoresis. 1997 Mar-Apr;18(3-4):403-8. doi: 10.1002/elps.1150180314. Electrophoresis. 1997. PMID: 9150918
Protein identification with N and C-terminal sequence tags in proteome projects.
Wilkins MR, Gasteiger E, Tonella L, Ou K, Tyler M, Sanchez JC, Gooley AA, Walsh BJ, Bairoch A, Appel RD, Williams KL, Hochstrasser DF. Wilkins MR, et al. Among authors: gasteiger e. J Mol Biol. 1998 May 8;278(3):599-608. doi: 10.1006/jmbi.1998.1726. J Mol Biol. 1998. PMID: 9600841
We demonstrate the utility of this identification approach with sequence tags generated from 91 different E. coli proteins purified by 2D gel electrophoresis. ...
We demonstrate the utility of this identification approach with sequence tags generated from 91 different E. coli proteins purified b …
High-throughput mass spectrometric discovery of protein post-translational modifications.
Wilkins MR, Gasteiger E, Gooley AA, Herbert BR, Molloy MP, Binz PA, Ou K, Sanchez JC, Bairoch A, Williams KL, Hochstrasser DF. Wilkins MR, et al. Among authors: gasteiger e. J Mol Biol. 1999 Jun 11;289(3):645-57. doi: 10.1006/jmbi.1999.2794. J Mol Biol. 1999. PMID: 10356335
Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection.
Gras R, Müller M, Gasteiger E, Gay S, Binz PA, Bienvenut W, Hoogland C, Sanchez JC, Bairoch A, Hochstrasser DF, Appel RD. Gras R, et al. Among authors: gasteiger e. Electrophoresis. 1999 Dec;20(18):3535-50. doi: 10.1002/(SICI)1522-2683(19991201)20:18<3535::AID-ELPS3535>3.0.CO;2-J. Electrophoresis. 1999. PMID: 10612280
Annotation of glycoproteins in the SWISS-PROT database.
Jung E, Veuthey AL, Gasteiger E, Bairoch A. Jung E, et al. Among authors: gasteiger e. Proteomics. 2001 Feb;1(2):262-8. doi: 10.1002/1615-9861(200102)1:2<262::AID-PROT262>3.0.CO;2-#. Proteomics. 2001. PMID: 11680872
The Sulfinator: predicting tyrosine sulfation sites in protein sequences.
Monigatti F, Gasteiger E, Bairoch A, Jung E. Monigatti F, et al. Among authors: gasteiger e. Bioinformatics. 2002 May;18(5):769-70. doi: 10.1093/bioinformatics/18.5.769. Bioinformatics. 2002. PMID: 12050077
High-quality protein knowledge resource: SWISS-PROT and TrEMBL.
O'Donovan C, Martin MJ, Gattiker A, Gasteiger E, Bairoch A, Apweiler R. O'Donovan C, et al. Among authors: gasteiger e. Brief Bioinform. 2002 Sep;3(3):275-84. doi: 10.1093/bib/3.3.275. Brief Bioinform. 2002. PMID: 12230036
FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification.
Gattiker A, Bienvenut WV, Bairoch A, Gasteiger E. Gattiker A, et al. Among authors: gasteiger e. Proteomics. 2002 Oct;2(10):1435-44. doi: 10.1002/1615-9861(200210)2:10<1435::AID-PROT1435>3.0.CO;2-9. Proteomics. 2002. PMID: 12422360
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
Boeckmann B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, Gasteiger E, Martin MJ, Michoud K, O'Donovan C, Phan I, Pilbout S, Schneider M. Boeckmann B, et al. Among authors: gasteiger e. Nucleic Acids Res. 2003 Jan 1;31(1):365-70. doi: 10.1093/nar/gkg095. Nucleic Acids Res. 2003. PMID: 12520024 Free PMC article.
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