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Swiss-Prot: juggling between evolution and stability.
Bairoch A, Boeckmann B, Ferro S, Gasteiger E. Bairoch A, et al. Brief Bioinform. 2004 Mar;5(1):39-55. doi: 10.1093/bib/5.1.39. Brief Bioinform. 2004. PMID: 15153305
Detailed peptide characterization using PEPTIDEMASS--a World-Wide-Web-accessible tool.
Wilkins MR, Lindskog I, Gasteiger E, Bairoch A, Sanchez JC, Hochstrasser DF, Appel RD. Wilkins MR, et al. Electrophoresis. 1997 Mar-Apr;18(3-4):403-8. doi: 10.1002/elps.1150180314. Electrophoresis. 1997. PMID: 9150918
Protein identification with N and C-terminal sequence tags in proteome projects.
Wilkins MR, Gasteiger E, Tonella L, Ou K, Tyler M, Sanchez JC, Gooley AA, Walsh BJ, Bairoch A, Appel RD, Williams KL, Hochstrasser DF. Wilkins MR, et al. J Mol Biol. 1998 May 8;278(3):599-608. doi: 10.1006/jmbi.1998.1726. J Mol Biol. 1998. PMID: 9600841
We demonstrate the utility of this identification approach with sequence tags generated from 91 different E. coli proteins purified by 2D gel electrophoresis. ...
We demonstrate the utility of this identification approach with sequence tags generated from 91 different E. coli proteins purified b …
Multiple parameter cross-species protein identification using MultiIdent--a world-wide web accessible tool.
Wilkins MR, Gasteiger E, Wheeler CH, Lindskog I, Sanchez JC, Bairoch A, Appel RD, Dunn MJ, Hochstrasser DF. Wilkins MR, et al. Electrophoresis. 1998 Dec;19(18):3199-206. doi: 10.1002/elps.1150191824. Electrophoresis. 1998. PMID: 9932815
Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection.
Gras R, Müller M, Gasteiger E, Gay S, Binz PA, Bienvenut W, Hoogland C, Sanchez JC, Bairoch A, Hochstrasser DF, Appel RD. Gras R, et al. Electrophoresis. 1999 Dec;20(18):3535-50. doi: 10.1002/(SICI)1522-2683(19991201)20:18<3535::AID-ELPS3535>3.0.CO;2-J. Electrophoresis. 1999. PMID: 10612280
SWISS-PROT: connecting biomolecular knowledge via a protein database.
Gasteiger E, Jung E, Bairoch A. Gasteiger E, et al. Curr Issues Mol Biol. 2001 Jul;3(3):47-55. Curr Issues Mol Biol. 2001. PMID: 11488411 Review.
Annotation of glycoproteins in the SWISS-PROT database.
Jung E, Veuthey AL, Gasteiger E, Bairoch A. Jung E, et al. Proteomics. 2001 Feb;1(2):262-8. doi: 10.1002/1615-9861(200102)1:2<262::AID-PROT262>3.0.CO;2-#. Proteomics. 2001. PMID: 11680872
The Sulfinator: predicting tyrosine sulfation sites in protein sequences.
Monigatti F, Gasteiger E, Bairoch A, Jung E. Monigatti F, et al. Bioinformatics. 2002 May;18(5):769-70. doi: 10.1093/bioinformatics/18.5.769. Bioinformatics. 2002. PMID: 12050077
High-quality protein knowledge resource: SWISS-PROT and TrEMBL.
O'Donovan C, Martin MJ, Gattiker A, Gasteiger E, Bairoch A, Apweiler R. O'Donovan C, et al. Brief Bioinform. 2002 Sep;3(3):275-84. doi: 10.1093/bib/3.3.275. Brief Bioinform. 2002. PMID: 12230036
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