Gat-Viks I - Search Results

1

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli.

Gat-Viks I, Chevrier N, Wilentzik R, Eisenhaure T, Raychowdhury R, Steuerman Y, Shalek AK, Hacohen N, Amit I, Regev A. Gat-Viks I, et al. Nat Biotechnol. 2013 Apr;31(4):342-9. doi: 10.1038/nbt.2519. Epub 2013 Mar 17. Nat Biotechnol. 2013. PMID: 23503680 Free PMC article.

2

A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection.

Shapira SD, Gat-Viks I, Shum BO, Dricot A, de Grace MM, Wu L, Gupta PB, Hao T, Silver SJ, Root DE, Hill DE, Regev A, Hacohen N. Shapira SD, et al. Cell. 2009 Dec 24;139(7):1255-67. doi: 10.1016/j.cell.2009.12.018. Cell. 2009. PMID: 20064372 Free PMC article.

3

Understanding gene sequence variation in the context of transcription regulation in yeast.

Gat-Viks I, Meller R, Kupiec M, Shamir R. Gat-Viks I, et al. PLoS Genet. 2010 Jan;6(1):e1000800. doi: 10.1371/journal.pgen.1000800. Epub 2010 Jan 8. PLoS Genet. 2010. PMID: 20066030 Free PMC article.

4

Systematic discovery of TLR signaling components delineates viral-sensing circuits.

Chevrier N, Mertins P, Artyomov MN, Shalek AK, Iannacone M, Ciaccio MF, Gat-Viks I, Tonti E, DeGrace MM, Clauser KR, Garber M, Eisenhaure TM, Yosef N, Robinson J, Sutton A, Andersen MS, Root DE, von Andrian U, Jones RB, Park H, Carr SA, Regev A, Amit I, Hacohen N. Chevrier N, et al. Cell. 2011 Nov 11;147(4):853-67. doi: 10.1016/j.cell.2011.10.022. Cell. 2011. PMID: 22078882 Free PMC article.

5

Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing.

Kirby A, Gnirke A, Jaffe DB, Barešová V, Pochet N, Blumenstiel B, Ye C, Aird D, Stevens C, Robinson JT, Cabili MN, Gat-Viks I, Kelliher E, Daza R, DeFelice M, Hůlková H, Sovová J, Vylet'al P, Antignac C, Guttman M, Handsaker RE, Perrin D, Steelman S, Sigurdsson S, Scheinman SJ, Sougnez C, Cibulskis K, Parkin M, Green T, Rossin E, Zody MC, Xavier RJ, Pollak MR, Alper SL, Lindblad-Toh K, Gabriel S, Hart PS, Regev A, Nusbaum C, Kmoch S, Bleyer AJ, Lander ES, Daly MJ. Kirby A, et al. Nat Genet. 2013 Mar;45(3):299-303. doi: 10.1038/ng.2543. Epub 2013 Feb 10. Nat Genet. 2013. PMID: 23396133 Free PMC article.

6

Digital cell quantification identifies global immune cell dynamics during influenza infection.

Altboum Z, Steuerman Y, David E, Barnett-Itzhaki Z, Valadarsky L, Keren-Shaul H, Meningher T, Mendelson E, Mandelboim M, Gat-Viks I, Amit I. Altboum Z, et al. Mol Syst Biol. 2014 Feb 28;10(2):720. doi: 10.1002/msb.134947. Print 2014. Mol Syst Biol. 2014. PMID: 24586061 Free PMC article.

7

A statistical framework for revealing signaling pathways perturbed by DNA variants.

Wilentzik R, Gat-Viks I. Wilentzik R, et al. Nucleic Acids Res. 2015 Jun 23;43(11):e74. doi: 10.1093/nar/gkv203. Epub 2015 Mar 12. Nucleic Acids Res. 2015. PMID: 25765646 Free PMC article.

8

Linking traits based on their shared molecular mechanisms.

Oren Y, Nachshon A, Frishberg A, Wilentzik R, Gat-Viks I. Oren Y, et al. Elife. 2015 Mar 17;4:e04346. doi: 10.7554/eLife.04346. Elife. 2015. PMID: 25781485 Free PMC article.

9

CoD: inferring immune-cell quantities related to disease states.

Frishberg A, Steuerman Y, Gat-Viks I. Frishberg A, et al. Bioinformatics. 2015 Dec 15;31(24):3961-9. doi: 10.1093/bioinformatics/btv498. Epub 2015 Aug 26. Bioinformatics. 2015. PMID: 26315914

10

Exploiting Gene-Expression Deconvolution to Probe the Genetics of the Immune System.

Steuerman Y, Gat-Viks I. Steuerman Y, et al. PLoS Comput Biol. 2016 Apr 1;12(4):e1004856. doi: 10.1371/journal.pcbi.1004856. eCollection 2016 Apr. PLoS Comput Biol. 2016. PMID: 27035464 Free PMC article.

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