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Dissecting the logical types of network control in gene expression profiles.
Marr C, Geertz M, Hütt MT, Muskhelishvili G. Marr C, et al. Among authors: geertz m. BMC Syst Biol. 2008 Feb 19;2:18. doi: 10.1186/1752-0509-2-18. BMC Syst Biol. 2008. PMID: 18284674 Free PMC article.
High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes.
Lang B, Blot N, Bouffartigues E, Buckle M, Geertz M, Gualerzi CO, Mavathur R, Muskhelishvili G, Pon CL, Rimsky S, Stella S, Babu MM, Travers A. Lang B, et al. Among authors: geertz m. Nucleic Acids Res. 2007;35(18):6330-7. doi: 10.1093/nar/gkm712. Epub 2007 Sep 18. Nucleic Acids Res. 2007. PMID: 17881364 Free PMC article.
Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU.
Berger M, Farcas A, Geertz M, Zhelyazkova P, Brix K, Travers A, Muskhelishvili G. Berger M, et al. Among authors: geertz m. EMBO Rep. 2010 Jan;11(1):59-64. doi: 10.1038/embor.2009.232. Epub 2009 Nov 13. EMBO Rep. 2010. PMID: 20010798 Free PMC article.
Structural coupling between RNA polymerase composition and DNA supercoiling in coordinating transcription: a global role for the omega subunit?
Geertz M, Travers A, Mehandziska S, Sobetzko P, Chandra-Janga S, Shimamoto N, Muskhelishvili G. Geertz M, et al. mBio. 2011 Aug 2;2(4):e00034-11. doi: 10.1128/mBio.00034-11. Print 2011. mBio. 2011. PMID: 21810966 Free PMC article.
Analog regulation of metabolic demand.
Sonnenschein N, Geertz M, Muskhelishvili G, Hütt MT. Sonnenschein N, et al. Among authors: geertz m. BMC Syst Biol. 2011 Mar 15;5:40. doi: 10.1186/1752-0509-5-40. BMC Syst Biol. 2011. PMID: 21406074 Free PMC article.
General organisational principles of the transcriptional regulation system: a tree or a circle?
Muskhelishvili G, Sobetzko P, Geertz M, Berger M. Muskhelishvili G, et al. Among authors: geertz m. Mol Biosyst. 2010 Apr;6(4):662-76. doi: 10.1039/b909192k. Epub 2010 Feb 8. Mol Biosyst. 2010. PMID: 20237643 Review.
Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome.
Blot N, Mavathur R, Geertz M, Travers A, Muskhelishvili G. Blot N, et al. Among authors: geertz m. EMBO Rep. 2006 Jul;7(7):710-5. doi: 10.1038/sj.embor.7400729. Epub 2006 Jun 16. EMBO Rep. 2006. PMID: 16799466 Free PMC article.
Experimental strategies for studying transcription factor-DNA binding specificities.
Geertz M, Maerkl SJ. Geertz M, et al. Brief Funct Genomics. 2010 Dec;9(5-6):362-73. doi: 10.1093/bfgp/elq023. Epub 2010 Sep 23. Brief Funct Genomics. 2010. PMID: 20864494 Free PMC article. Review.
Massively parallel measurements of molecular interaction kinetics on a microfluidic platform.
Geertz M, Shore D, Maerkl SJ. Geertz M, et al. Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16540-5. doi: 10.1073/pnas.1206011109. Epub 2012 Sep 24. Proc Natl Acad Sci U S A. 2012. PMID: 23012409 Free PMC article.
A high-throughput microfluidic method for generating and characterizing transcription factor mutant libraries.
Geertz M, Rockel S, Maerkl SJ. Geertz M, et al. Methods Mol Biol. 2012;813:107-23. doi: 10.1007/978-1-61779-412-4_6. Methods Mol Biol. 2012. PMID: 22083738
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