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Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum.
Kazanov MD, Li X, Gelfand MS, Osterman AL, Rodionov DA. Kazanov MD, et al. Among authors: gelfand ms. Nucleic Acids Res. 2013 Jan;41(2):790-803. doi: 10.1093/nar/gks1184. Epub 2012 Dec 2. Nucleic Acids Res. 2013. PMID: 23209028 Free PMC article.
RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.
Cipriano MJ, Novichkov PN, Kazakov AE, Rodionov DA, Arkin AP, Gelfand MS, Dubchak I. Cipriano MJ, et al. Among authors: gelfand ms. BMC Genomics. 2013 Apr 2;14:213. doi: 10.1186/1471-2164-14-213. BMC Genomics. 2013. PMID: 23547897 Free PMC article.
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.
Novichkov PS, Rodionov DA, Stavrovskaya ED, Novichkova ES, Kazakov AE, Gelfand MS, Arkin AP, Mironov AA, Dubchak I. Novichkov PS, et al. Among authors: gelfand ms. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. doi: 10.1093/nar/gkq531. Epub 2010 Jun 11. Nucleic Acids Res. 2010. PMID: 20542910 Free PMC article.
Glutamine versus ammonia utilization in the NAD synthetase family.
De Ingeniis J, Kazanov MD, Shatalin K, Gelfand MS, Osterman AL, Sorci L. De Ingeniis J, et al. Among authors: gelfand ms. PLoS One. 2012;7(6):e39115. doi: 10.1371/journal.pone.0039115. Epub 2012 Jun 15. PLoS One. 2012. PMID: 22720044 Free PMC article.
A novel class of modular transporters for vitamins in prokaryotes.
Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB, Slotboom DJ, Gelfand MS, Osterman AL, Hanson AD, Eitinger T. Rodionov DA, et al. Among authors: gelfand ms. J Bacteriol. 2009 Jan;191(1):42-51. doi: 10.1128/JB.01208-08. Epub 2008 Oct 17. J Bacteriol. 2009. PMID: 18931129 Free PMC article.
Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis.
Yang C, Rodionov DA, Li X, Laikova ON, Gelfand MS, Zagnitko OP, Romine MF, Obraztsova AY, Nealson KH, Osterman AL. Yang C, et al. Among authors: gelfand ms. J Biol Chem. 2006 Oct 6;281(40):29872-85. doi: 10.1074/jbc.M605052200. Epub 2006 Jul 20. J Biol Chem. 2006. PMID: 16857666
Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.
Rodionov DA, Li X, Rodionova IA, Yang C, Sorci L, Dervyn E, Martynowski D, Zhang H, Gelfand MS, Osterman AL. Rodionov DA, et al. Among authors: gelfand ms. Nucleic Acids Res. 2008 Apr;36(6):2032-46. doi: 10.1093/nar/gkn046. Epub 2008 Feb 14. Nucleic Acids Res. 2008. PMID: 18276644 Free PMC article.
Comparative genomics of transcriptional regulation of methionine metabolism in Proteobacteria.
Leyn SA, Suvorova IA, Kholina TD, Sherstneva SS, Novichkov PS, Gelfand MS, Rodionov DA. Leyn SA, et al. Among authors: gelfand ms. PLoS One. 2014 Nov 20;9(11):e113714. doi: 10.1371/journal.pone.0113714. eCollection 2014. PLoS One. 2014. PMID: 25411846 Free PMC article.
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.
Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS. Rodionov DA, et al. Among authors: gelfand ms. BMC Genomics. 2011 Jun 15;12 Suppl 1(Suppl 1):S3. doi: 10.1186/1471-2164-12-S1-S3. BMC Genomics. 2011. PMID: 21810205 Free PMC article.
Comparative and functional genomic analysis of prokaryotic nickel and cobalt uptake transporters: evidence for a novel group of ATP-binding cassette transporters.
Rodionov DA, Hebbeln P, Gelfand MS, Eitinger T. Rodionov DA, et al. Among authors: gelfand ms. J Bacteriol. 2006 Jan;188(1):317-27. doi: 10.1128/JB.188.1.317-327.2006. J Bacteriol. 2006. PMID: 16352848 Free PMC article.
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