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Integrative model of the response of yeast to osmotic shock.
Klipp E, Nordlander B, Krüger R, Gennemark P, Hohmann S. Klipp E, et al. Nat Biotechnol. 2005 Aug;23(8):975-82. doi: 10.1038/nbt1114. Epub 2005 Jul 17. Nat Biotechnol. 2005. PMID: 16025103
Modeling yeast osmoadaptation at different levels of resolution.
Kühn C, Gennemark P. Kühn C, et al. J Bioinform Comput Biol. 2013 Apr;11(2):1330001. doi: 10.1142/S0219720013300013. Epub 2013 Jan 9. J Bioinform Comput Biol. 2013. PMID: 23600818 Review.
Formal representation of the high osmolarity glycerol pathway in yeast.
Kühn C, Prasad KV, Klipp E, Gennemark P. Kühn C, et al. Genome Inform. 2010 Jan;22:69-83. Genome Inform. 2010. PMID: 20238420
A simple mathematical model of adaptation to high osmolarity in yeast.
Gennemark P, Nordlander B, Hohmann S, Wedelin D. Gennemark P, et al. In Silico Biol. 2006;6(3):193-214. In Silico Biol. 2006. PMID: 16922683
Benchmarks for identification of ordinary differential equations from time series data.
Gennemark P, Wedelin D. Gennemark P, et al. Bioinformatics. 2009 Mar 15;25(6):780-6. doi: 10.1093/bioinformatics/btp050. Epub 2009 Jan 28. Bioinformatics. 2009. PMID: 19176548 Free PMC article.
Models from experiments: combinatorial drug perturbations of cancer cells.
Nelander S, Wang W, Nilsson B, She QB, Pratilas C, Rosen N, Gennemark P, Sander C. Nelander S, et al. Mol Syst Biol. 2008;4:216. doi: 10.1038/msb.2008.53. Epub 2008 Sep 2. Mol Syst Biol. 2008. PMID: 18766176 Free PMC article.
Modeling energy intake by adding homeostatic feedback and drug intervention.
Gennemark P, Hjorth S, Gabrielsson J. Gennemark P, et al. J Pharmacokinet Pharmacodyn. 2015 Feb;42(1):79-96. doi: 10.1007/s10928-014-9399-4. Epub 2014 Nov 12. J Pharmacokinet Pharmacodyn. 2015. PMID: 25388764
Inferring Half-Lives at the Effect Site of Oligonucleotide Drugs.
Jansson-Löfmark R, Gennemark P. Jansson-Löfmark R, et al. Among authors: gennemark p. Nucleic Acid Ther. 2018 Dec;28(6):319-325. doi: 10.1089/nat.2018.0739. Epub 2018 Oct 31. Nucleic Acid Ther. 2018. PMID: 30328765
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