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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1968 1
1971 2
1972 2
1974 1
1975 2
1976 3
1977 7
1978 5
1979 4
1980 6
1981 11
1982 23
1983 30
1984 28
1985 28
1986 27
1987 31
1988 26
1989 45
1990 30
1991 40
1992 31
1993 44
1994 52
1995 68
1996 64
1997 74
1998 79
1999 130
2000 129
2001 170
2002 366
2003 442
2004 556
2005 661
2006 780
2007 789
2008 599
2009 624
2010 554
2011 707
2012 711
2013 793
2014 881
2015 845
2016 771
2017 663
2018 582
2019 623
2020 398
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11,024 results
Results by year

Citations

1 article found by citation matching

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Page 1
Genome-wide DNA methylation profiling using the methylation-dependent restriction enzyme LpnPI.
Boers R, Boers J, de Hoon B, Kockx C, Ozgur Z, Molijn A, van IJcken W, Laven J, Gribnau J. Boers R, et al. Genome Res. 2018 Jan;28(1):88-99. doi: 10.1101/gr.222885.117. Epub 2017 Dec 8. Genome Res. 2018. PMID: 29222086 Free PMC article.
This unique property prevents complete digestion of methylation-dense DNA and allows accurate genome-wide analysis of CpG methylation at single-nucleotide resolution. Methylated DNA sequencing (MeD-seq) of LpnPI digested fragments revealed highly reproducible genome
This unique property prevents complete digestion of methylation-dense DNA and allows accurate genome-wide analysis of CpG methylation …
A chromosome-scale assembly of the axolotl genome.
Smith JJ, Timoshevskaya N, Timoshevskiy VA, Keinath MC, Hardy D, Voss SR. Smith JJ, et al. Genome Res. 2019 Feb;29(2):317-324. doi: 10.1101/gr.241901.118. Epub 2019 Jan 24. Genome Res. 2019. PMID: 30679309 Free PMC article.
However, its large genome (∼32 Gb) presents a formidable barrier to genetic analyses. Recent efforts have yielded genome assemblies consisting of thousands of unordered scaffolds that resolve gene structures, but do not yet permit large-scale analyses of genome
However, its large genome (∼32 Gb) presents a formidable barrier to genetic analyses. Recent efforts have yielded genome assem …
ABCA4 midigenes reveal the full splice spectrum of all reported noncanonical splice site variants in Stargardt disease.
Sangermano R, Khan M, Cornelis SS, Richelle V, Albert S, Garanto A, Elmelik D, Qamar R, Lugtenberg D, van den Born LI, Collin RWJ, Cremers FPM. Sangermano R, et al. Genome Res. 2018 Jan;28(1):100-110. doi: 10.1101/gr.226621.117. Epub 2017 Nov 21. Genome Res. 2018. PMID: 29162642 Free PMC article.
Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
Ulianov SV, Khrameeva EE, Gavrilov AA, Flyamer IM, Kos P, Mikhaleva EA, Penin AA, Logacheva MD, Imakaev MV, Chertovich A, Gelfand MS, Shevelyov YY, Razin SV. Ulianov SV, et al. Genome Res. 2016 Jan;26(1):70-84. doi: 10.1101/gr.196006.115. Epub 2015 Oct 30. Genome Res. 2016. PMID: 26518482 Free PMC article.
Mechanisms that underlie partitioning of the genome into TADs remain poorly understood. To explore principles of TAD folding in Drosophila melanogaster, we performed Hi-C and poly(A)(+) RNA-seq in four cell lines of various origins (S2, Kc167, DmBG3-c2, and OSC). ...
Mechanisms that underlie partitioning of the genome into TADs remain poorly understood. To explore principles of TAD folding in Droso …
Large-scale discovery of mouse transgenic integration sites reveals frequent structural variation and insertional mutagenesis.
Goodwin LO, Splinter E, Davis TL, Urban R, He H, Braun RE, Chesler EJ, Kumar V, van Min M, Ndukum J, Philip VM, Reinholdt LG, Svenson K, White JK, Sasner M, Lutz C, Murray SA. Goodwin LO, et al. Genome Res. 2019 Mar;29(3):494-505. doi: 10.1101/gr.233866.117. Epub 2019 Jan 18. Genome Res. 2019. PMID: 30659012 Free PMC article.
Generated through the random integration of DNA fragments into the host genome, transgenesis can lead to insertional mutagenesis if a coding gene or an essential element is disrupted, and there is evidence that larger scale structural variation can accompany the integratio …
Generated through the random integration of DNA fragments into the host genome, transgenesis can lead to insertional mutagenesis if a …
SIDR: simultaneous isolation and parallel sequencing of genomic DNA and total RNA from single cells.
Han KY, Kim KT, Joung JG, Son DS, Kim YJ, Jo A, Jeon HJ, Moon HS, Yoo CE, Chung W, Eum HH, Kim S, Kim HK, Lee JE, Ahn MJ, Lee HO, Park D, Park WY. Han KY, et al. Genome Res. 2018 Jan;28(1):75-87. doi: 10.1101/gr.223263.117. Epub 2017 Dec 5. Genome Res. 2018. PMID: 29208629 Free PMC article.
Simultaneous sequencing of the genome and transcriptome at the single-cell level is a powerful tool for characterizing genomic and transcriptomic variation and revealing correlative relationships. However, it remains technically challenging to analyze both the genome
Simultaneous sequencing of the genome and transcriptome at the single-cell level is a powerful tool for characterizing genomic and tr …
Fast and accurate de novo genome assembly from long uncorrected reads.
Vaser R, Sović I, Nagarajan N, Šikić M. Vaser R, et al. Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18. Genome Res. 2017. PMID: 28100585 Free PMC article.
Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells.
Miraldi ER, Pokrovskii M, Watters A, Castro DM, De Veaux N, Hall JA, Lee JY, Ciofani M, Madar A, Carriero N, Littman DR, Bonneau R. Miraldi ER, et al. Genome Res. 2019 Mar;29(3):449-463. doi: 10.1101/gr.238253.118. Epub 2019 Jan 29. Genome Res. 2019. PMID: 30696696 Free PMC article.
The assay for transposase-accessible chromatin (ATAC)-seq, coupled with TF motif analysis, provides indirect evidence of chromatin binding for hundreds of TFs genome-wide. ...In this resource-rich mammalian setting, our extensive benchmarking provides quantitative, geno
The assay for transposase-accessible chromatin (ATAC)-seq, coupled with TF motif analysis, provides indirect evidence of chromatin binding f …
Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.
Prasad TS, Mohanty AK, Kumar M, Sreenivasamurthy SK, Dey G, Nirujogi RS, Pinto SM, Madugundu AK, Patil AH, Advani J, Manda SS, Gupta MK, Dwivedi SB, Kelkar DS, Hall B, Jiang X, Peery A, Rajagopalan P, Yelamanchi SD, Solanki HS, Raja R, Sathe GJ, Chavan S, Verma R, Patel KM, Jain AP, Syed N, Datta KK, Khan AA, Dammalli M, Jayaram S, Radhakrishnan A, Mitchell CJ, Na CH, Kumar N, Sinnis P, Sharakhov IV, Wang C, Gowda H, Tu Z, Kumar A, Pandey A. Prasad TS, et al. Genome Res. 2017 Jan;27(1):133-144. doi: 10.1101/gr.201368.115. Epub 2016 Nov 15. Genome Res. 2017. PMID: 28003436 Free PMC article.
Complementing genome sequence with deep transcriptome and proteome data could enable more accurate assembly and annotation of newly sequenced genomes. ...Based on transcriptomic data alone, we identified and corrected 535 events of incomplete genome assembly involvi …
Complementing genome sequence with deep transcriptome and proteome data could enable more accurate assembly and annotation of newly s …
11,024 results
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