Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1948 1
1949 1
1950 2
1951 2
1952 2
1953 2
1954 3
1957 6
1960 4
1961 5
1962 5
1963 5
1964 6
1965 12
1966 9
1967 14
1968 25
1969 45
1970 49
1971 96
1972 164
1973 157
1974 284
1975 370
1976 484
1977 550
1978 753
1979 1038
1980 1460
1981 1737
1982 2214
1983 2852
1984 3739
1985 4177
1986 4958
1987 6056
1988 7182
1989 9005
1990 10558
1991 11859
1992 13398
1993 15693
1994 17447
1995 18663
1996 18158
1997 17757
1998 18329
1999 19560
2000 21732
2001 22729
2002 23110
2003 24941
2004 27626
2005 28957
2006 29937
2007 30728
2008 31430
2009 33116
2010 35318
2011 38228
2012 41018
2013 42013
2014 44477
2015 45454
2016 45673
2017 43719
2018 43808
2019 46735
2020 48544
2021 50214
2022 44334
2023 40892
2024 16961

Text availability

Article attribute

Article type

Publication date

Search Results

1,020,746 results

Results by year

Filters applied: . Clear all
The following term was not found in PubMed: LMG23202T
Page 1
The Sequence Alignment/Map format and SAMtools.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. Li H, et al. Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505943 Free PMC article.
SUMMARY: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms. It is flexible in style, compac …
SUMMARY: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference seque
Sequencing technologies and genome sequencing.
Pareek CS, Smoczynski R, Tretyn A. Pareek CS, et al. J Appl Genet. 2011 Nov;52(4):413-35. doi: 10.1007/s13353-011-0057-x. Epub 2011 Jun 23. J Appl Genet. 2011. PMID: 21698376 Free PMC article. Review.
In the relatively short time frame since 2005, the HT-NGS technologies are revolutionizing the human and animal genome researches by analysis of chromatin immunoprecipitation coupled to DNA microarray (ChIP-chip) or sequencing (ChIP-seq), RNA sequencing
In the relatively short time frame since 2005, the HT-NGS technologies are revolutionizing the human and animal genome researches by …
Whole genome sequencing.
Ng PC, Kirkness EF. Ng PC, et al. Methods Mol Biol. 2010;628:215-26. doi: 10.1007/978-1-60327-367-1_12. Methods Mol Biol. 2010. PMID: 20238084 Review.
We review methodologies for whole genome sequencing. There are two approaches for assembling short shotgun sequence reads into longer contiguous genomic sequences. ...We expect methodologies to evolve rapidly as sequencing technologies im …
We review methodologies for whole genome sequencing. There are two approaches for assembling short shotgun sequence rea …
Comparison of next-generation sequencing systems.
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M. Liu L, et al. J Biomed Biotechnol. 2012;2012:251364. doi: 10.1155/2012/251364. Epub 2012 Jul 5. J Biomed Biotechnol. 2012. PMID: 22829749 Free PMC article. Review.
With fast development and wide applications of next-generation sequencing (NGS) technologies, genomic sequence information is within reach to aid the achievement of goals to decode life mysteries, make better crops, detect pathogens, and improve life qualitie …
With fast development and wide applications of next-generation sequencing (NGS) technologies, genomic sequence informat …
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA. McKenna A, et al. Genome Res. 2010 Sep;20(9):1297-303. doi: 10.1101/gr.107524.110. Epub 2010 Jul 19. Genome Res. 2010. PMID: 20644199 Free PMC article.
Next-generation DNA sequencing (NGS) projects, such as the 1000 Genomes Project, are already revolutionizing our understanding of genetic variation among individuals. ...We conclude that the GATK programming framework enables developers and analysts to quickly and e …
Next-generation DNA sequencing (NGS) projects, such as the 1000 Genomes Project, are already revolutionizing our understanding …
Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing - Review.
Dorado G, Gálvez S, Rosales TE, Vásquez VF, Hernández P. Dorado G, et al. Biomolecules. 2021 Jul 28;11(8):1111. doi: 10.3390/biom11081111. Biomolecules. 2021. PMID: 34439777 Free PMC article. Review.
The first allows to sequence small DNA fragments. The second one increases throughput, reducing turnaround and pricing, and is therefore more convenient to sequence full genomes and transcriptomes. ...Basic analyses and applications are now facilitated with n …
The first allows to sequence small DNA fragments. The second one increases throughput, reducing turnaround and pricing, and is theref …
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
Kim D, Paggi JM, Park C, Bennett C, Salzberg SL. Kim D, et al. Nat Biotechnol. 2019 Aug;37(8):907-915. doi: 10.1038/s41587-019-0201-4. Epub 2019 Aug 2. Nat Biotechnol. 2019. PMID: 31375807 Free PMC article.
We present a method named HISAT2 (hierarchical indexing for spliced alignment of transcripts 2) that can align both DNA and RNA sequences using a graph Ferragina Manzini index. We use HISAT2 to represent and search an expanded model of the human reference genome in …
We present a method named HISAT2 (hierarchical indexing for spliced alignment of transcripts 2) that can align both DNA and RNA sequences
Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes.
Zhang F, Xue H, Dong X, Li M, Zheng X, Li Z, Xu J, Wang W, Wei C. Zhang F, et al. Genome Res. 2022 May;32(5):853-863. doi: 10.1101/gr.276015.121. Epub 2022 Apr 8. Genome Res. 2022. PMID: 35396275 Free PMC article.
The concept of pan-genome, which is the collection of all genomes from a population, has shown a great potential in genomics study, especially for crop sciences. ...Compared to NipRG, the long-read sequencing-based pan-genome constructed from 10 …
The concept of pan-genome, which is the collection of all genomes from a population, has shown a great potential in genomic
Genome Sequencing.
Yoshinaga Y, Daum C, He G, O'Malley R. Yoshinaga Y, et al. Methods Mol Biol. 2018;1775:37-52. doi: 10.1007/978-1-4939-7804-5_4. Methods Mol Biol. 2018. PMID: 29876807
Strategies for sequencing fungal genomes on next-generation sequencing (NGS) platforms depend on the characteristics of the genome of the targeted species, quantity and quality of the genomic DNA, and cost considerations. Massively parallel s
Strategies for sequencing fungal genomes on next-generation sequencing (NGS) platforms depend on the characteristics of …
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Li H, Durbin R. Li H, et al. Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15. Bioinformatics. 2010. PMID: 20080505 Free PMC article.
MOTIVATION: Many programs for aligning short sequencing reads to a reference genome have been developed in the last 2 years. ...RESULTS: We designed and implemented a new algorithm, Burrows-Wheeler Aligner's Smith-Waterman Alignment (BWA-SW), to align long sequen
MOTIVATION: Many programs for aligning short sequencing reads to a reference genome have been developed in the last 2 years. . …
1,020,746 results
You have reached the last available page of results. Please see the User Guide for more information.