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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1948 1
1949 1
1950 2
1951 2
1952 2
1953 2
1954 3
1957 6
1960 4
1961 5
1962 5
1963 5
1964 6
1965 12
1966 9
1967 14
1968 25
1969 45
1970 49
1971 96
1972 164
1973 157
1974 284
1975 370
1976 484
1977 550
1978 753
1979 1038
1980 1460
1981 1737
1982 2214
1983 2852
1984 3739
1985 4176
1986 4958
1987 6056
1988 7182
1989 9004
1990 10557
1991 11859
1992 13398
1993 15694
1994 17446
1995 18662
1996 18157
1997 17757
1998 18329
1999 19560
2000 21734
2001 22729
2002 23110
2003 24941
2004 27625
2005 28946
2006 29937
2007 30723
2008 31368
2009 32794
2010 34792
2011 37754
2012 40702
2013 41728
2014 44245
2015 45212
2016 45477
2017 43489
2018 43569
2019 46443
2020 48209
2021 49601
2022 26937
Text availability
Article attribute
Article type
Publication date

Search Results

948,418 results
Results by year
Filters applied: . Clear all The following term was not found in PubMed: LMG23202T
Page 1
The Sequence Alignment/Map format and SAMtools.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. Li H, et al. Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505943 Free PMC article.
SUMMARY: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms. It is flexible in style, compac …
SUMMARY: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference seque
Sequencing technologies and genome sequencing.
Pareek CS, Smoczynski R, Tretyn A. Pareek CS, et al. J Appl Genet. 2011 Nov;52(4):413-35. doi: 10.1007/s13353-011-0057-x. Epub 2011 Jun 23. J Appl Genet. 2011. PMID: 21698376 Free PMC article. Review.
In the relatively short time frame since 2005, the HT-NGS technologies are revolutionizing the human and animal genome researches by analysis of chromatin immunoprecipitation coupled to DNA microarray (ChIP-chip) or sequencing (ChIP-seq), RNA sequencing
In the relatively short time frame since 2005, the HT-NGS technologies are revolutionizing the human and animal genome researches by …
Comparison of next-generation sequencing systems.
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M. Liu L, et al. J Biomed Biotechnol. 2012;2012:251364. doi: 10.1155/2012/251364. Epub 2012 Jul 5. J Biomed Biotechnol. 2012. PMID: 22829749 Free PMC article. Review.
With fast development and wide applications of next-generation sequencing (NGS) technologies, genomic sequence information is within reach to aid the achievement of goals to decode life mysteries, make better crops, detect pathogens, and improve life qualitie …
With fast development and wide applications of next-generation sequencing (NGS) technologies, genomic sequence informat …
Whole genome sequencing.
Ng PC, Kirkness EF. Ng PC, et al. Methods Mol Biol. 2010;628:215-26. doi: 10.1007/978-1-60327-367-1_12. Methods Mol Biol. 2010. PMID: 20238084 Review.
Whole genome sequencing provides the most comprehensive collection of an individual's genetic variation. ...We review methodologies for whole genome sequencing. There are two approaches for assembling short shotgun sequence reads into lon …
Whole genome sequencing provides the most comprehensive collection of an individual's genetic variation. ...We review m …
Genome Sequencing.
Yoshinaga Y, Daum C, He G, O'Malley R. Yoshinaga Y, et al. Methods Mol Biol. 2018;1775:37-52. doi: 10.1007/978-1-4939-7804-5_4. Methods Mol Biol. 2018. PMID: 29876807
Strategies for sequencing fungal genomes on next-generation sequencing (NGS) platforms depend on the characteristics of the genome of the targeted species, quantity and quality of the genomic DNA, and cost considerations. Massively parallel s
Strategies for sequencing fungal genomes on next-generation sequencing (NGS) platforms depend on the characteristics of …
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
Kim D, Paggi JM, Park C, Bennett C, Salzberg SL. Kim D, et al. Nat Biotechnol. 2019 Aug;37(8):907-915. doi: 10.1038/s41587-019-0201-4. Epub 2019 Aug 2. Nat Biotechnol. 2019. PMID: 31375807 Free PMC article.
We present a method named HISAT2 (hierarchical indexing for spliced alignment of transcripts 2) that can align both DNA and RNA sequences using a graph Ferragina Manzini index. We use HISAT2 to represent and search an expanded model of the human reference genome in …
We present a method named HISAT2 (hierarchical indexing for spliced alignment of transcripts 2) that can align both DNA and RNA sequences
Insights from 20 years of bacterial genome sequencing.
Land M, Hauser L, Jun SR, Nookaew I, Leuze MR, Ahn TH, Karpinets T, Lund O, Kora G, Wassenaar T, Poudel S, Ussery DW. Land M, et al. Funct Integr Genomics. 2015 Mar;15(2):141-61. doi: 10.1007/s10142-015-0433-4. Epub 2015 Feb 27. Funct Integr Genomics. 2015. PMID: 25722247 Free PMC article. Review.
Using third-generation DNA sequencing, it is possible to completely sequence a bacterial genome in a few hours and identify some types of methylation sites along the genome as well. Sequencing of bacterial genome sequences is now a …
Using third-generation DNA sequencing, it is possible to completely sequence a bacterial genome in a few hours and iden …
Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing - Review.
Dorado G, Gálvez S, Rosales TE, Vásquez VF, Hernández P. Dorado G, et al. Biomolecules. 2021 Jul 28;11(8):1111. doi: 10.3390/biom11081111. Biomolecules. 2021. PMID: 34439777 Free PMC article. Review.
The first allows to sequence small DNA fragments. The second one increases throughput, reducing turnaround and pricing, and is therefore more convenient to sequence full genomes and transcriptomes. ...Basic analyses and applications are now facilitated with n …
The first allows to sequence small DNA fragments. The second one increases throughput, reducing turnaround and pricing, and is theref …
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA. McKenna A, et al. Genome Res. 2010 Sep;20(9):1297-303. doi: 10.1101/gr.107524.110. Epub 2010 Jul 19. Genome Res. 2010. PMID: 20644199 Free PMC article.
Next-generation DNA sequencing (NGS) projects, such as the 1000 Genomes Project, are already revolutionizing our understanding of genetic variation among individuals. ...We conclude that the GATK programming framework enables developers and analysts to quickly and e …
Next-generation DNA sequencing (NGS) projects, such as the 1000 Genomes Project, are already revolutionizing our understanding …
Minimap2: pairwise alignment for nucleotide sequences.
Li H. Li H. Bioinformatics. 2018 Sep 15;34(18):3094-3100. doi: 10.1093/bioinformatics/bty191. Bioinformatics. 2018. PMID: 29750242 Free PMC article.
MOTIVATION: Recent advances in sequencing technologies promise ultra-long reads of 100 kb in average, full-length mRNA or cDNA reads in high throughput and genomic contigs over 100 Mb in length. ...RESULTS: Minimap2 is a general-purpose alignment program to map DNA …
MOTIVATION: Recent advances in sequencing technologies promise ultra-long reads of 100 kb in average, full-length mRNA or cDNA reads …
948,418 results
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