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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1948 1
1949 1
1950 2
1951 2
1952 2
1953 2
1954 3
1957 6
1960 4
1961 5
1962 5
1963 5
1964 6
1965 12
1966 9
1967 14
1968 25
1969 45
1970 49
1971 96
1972 164
1973 158
1974 284
1975 370
1976 484
1977 550
1978 753
1979 1038
1980 1460
1981 1737
1982 2214
1983 2852
1984 3739
1985 4177
1986 4958
1987 6055
1988 7182
1989 9003
1990 10557
1991 11859
1992 13398
1993 15695
1994 17446
1995 18662
1996 18157
1997 17757
1998 18327
1999 19559
2000 21734
2001 22726
2002 23109
2003 24935
2004 27618
2005 28941
2006 29931
2007 30718
2008 31358
2009 32784
2010 34780
2011 37739
2012 40689
2013 41695
2014 44159
2015 45144
2016 45055
2017 43026
2018 42927
2019 45262
2020 37173
2021 2056
Text availability
Article attribute
Article type
Publication date

Search Results

869,631 results
Results by year
Filters applied: . Clear all The following term was not found in PubMed: LMG23202T
Page 1
The Sequence Alignment/Map format and SAMtools.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. Li H, et al. Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505943 Free PMC article.
SUMMARY: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms. It is flexible in style, compac …
SUMMARY: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference seque …
What is next generation sequencing?
Behjati S, Tarpey PS. Behjati S, et al. Arch Dis Child Educ Pract Ed. 2013 Dec;98(6):236-8. doi: 10.1136/archdischild-2013-304340. Epub 2013 Aug 28. Arch Dis Child Educ Pract Ed. 2013. PMID: 23986538 Free PMC article. Review.
Next generation sequencing (NGS), massively parallel or deep sequencing are related terms that describe a DNA sequencing technology which has revolutionised genomic research. Using NGS an entire human genome can be sequenced within a sing …
Next generation sequencing (NGS), massively parallel or deep sequencing are related terms that describe a DNA sequencing …
Sequencing technologies and genome sequencing.
Pareek CS, Smoczynski R, Tretyn A. Pareek CS, et al. J Appl Genet. 2011 Nov;52(4):413-35. doi: 10.1007/s13353-011-0057-x. Epub 2011 Jun 23. J Appl Genet. 2011. PMID: 21698376 Free PMC article. Review.
In the relatively short time frame since 2005, the HT-NGS technologies are revolutionizing the human and animal genome researches by analysis of chromatin immunoprecipitation coupled to DNA microarray (ChIP-chip) or sequencing (ChIP-seq), RNA sequencing …
In the relatively short time frame since 2005, the HT-NGS technologies are revolutionizing the human and animal genome researches by …
Comparison of next-generation sequencing systems.
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M. Liu L, et al. J Biomed Biotechnol. 2012;2012:251364. doi: 10.1155/2012/251364. Epub 2012 Jul 5. J Biomed Biotechnol. 2012. PMID: 22829749 Free PMC article. Review.
With fast development and wide applications of next-generation sequencing (NGS) technologies, genomic sequence information is within reach to aid the achievement of goals to decode life mysteries, make better crops, detect pathogens, and improve life qualitie …
With fast development and wide applications of next-generation sequencing (NGS) technologies, genomic sequence informat …
Whole genome sequencing.
Ng PC, Kirkness EF. Ng PC, et al. Methods Mol Biol. 2010;628:215-26. doi: 10.1007/978-1-60327-367-1_12. Methods Mol Biol. 2010. PMID: 20238084 Review.
Whole genome sequencing provides the most comprehensive collection of an individual's genetic variation. ...We review methodologies for whole genome sequencing. There are two approaches for assembling short shotgun sequence reads into lon …
Whole genome sequencing provides the most comprehensive collection of an individual's genetic variation. ...We review m …
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Li H, Durbin R. Li H, et al. Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15. Bioinformatics. 2010. PMID: 20080505 Free PMC article.
MOTIVATION: Many programs for aligning short sequencing reads to a reference genome have been developed in the last 2 years. ...RESULTS: We designed and implemented a new algorithm, Burrows-Wheeler Aligner's Smith-Waterman Alignment (BWA-SW), to align long …
MOTIVATION: Many programs for aligning short sequencing reads to a reference genome have been developed in the last 2 years. . …
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
Kim D, Paggi JM, Park C, Bennett C, Salzberg SL. Kim D, et al. Nat Biotechnol. 2019 Aug;37(8):907-915. doi: 10.1038/s41587-019-0201-4. Epub 2019 Aug 2. Nat Biotechnol. 2019. PMID: 31375807 Free PMC article.
We present a method named HISAT2 (hierarchical indexing for spliced alignment of transcripts 2) that can align both DNA and RNA sequences using a graph Ferragina Manzini index. We use HISAT2 to represent and search an expanded model of the human reference genome in …
We present a method named HISAT2 (hierarchical indexing for spliced alignment of transcripts 2) that can align both DNA and RNA sequences …
New Approaches for Genome Assembly and Scaffolding.
Rice ES, Green RE. Rice ES, et al. Annu Rev Anim Biosci. 2019 Feb 15;7:17-40. doi: 10.1146/annurev-animal-020518-115344. Epub 2018 Nov 28. Annu Rev Anim Biosci. 2019. PMID: 30485757 Review.
Affordable, high-throughput DNA sequencing has accelerated the pace of genome assembly over the past decade. Genome assemblies from high-throughput, short-read sequencing, however, are often not as contiguous as the first generation of genome as …
Affordable, high-throughput DNA sequencing has accelerated the pace of genome assembly over the past decade. Genome ass …
Insights from 20 years of bacterial genome sequencing.
Land M, Hauser L, Jun SR, Nookaew I, Leuze MR, Ahn TH, Karpinets T, Lund O, Kora G, Wassenaar T, Poudel S, Ussery DW. Land M, et al. Funct Integr Genomics. 2015 Mar;15(2):141-61. doi: 10.1007/s10142-015-0433-4. Epub 2015 Feb 27. Funct Integr Genomics. 2015. PMID: 25722247 Free PMC article. Review.
Using third-generation DNA sequencing, it is possible to completely sequence a bacterial genome in a few hours and identify some types of methylation sites along the genome as well. Sequencing of bacterial genome sequences is now a …
Using third-generation DNA sequencing, it is possible to completely sequence a bacterial genome in a few hours and iden …
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA. McKenna A, et al. Genome Res. 2010 Sep;20(9):1297-303. doi: 10.1101/gr.107524.110. Epub 2010 Jul 19. Genome Res. 2010. PMID: 20644199 Free PMC article.
Next-generation DNA sequencing (NGS) projects, such as the 1000 Genomes Project, are already revolutionizing our understanding of genetic variation among individuals. ...We conclude that the GATK programming framework enables developers and analysts to quickly and e …
Next-generation DNA sequencing (NGS) projects, such as the 1000 Genomes Project, are already revolutionizing our understanding …
869,631 results
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