Genome-wide mapping of yeast RNA polymerase II termination.
PLoS Genet. 2014.
PMID: 25299594
Free PMC article.
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Genome-wide mapping of yeast RNA polymerase II termination.
PLoS Genet. 2014 Oct 9;10(10):e1004632. doi: 10.1371/journal.pgen.1004632. eCollection 2014 Oct.
PLoS Genet. 2014.
PMID: 25299594
Free PMC article.
Yeast RNA polymerase II (Pol II) terminates transcription of coding transcripts through the polyadenylation (pA) pathway and non-coding transcripts through the non-polyadenylation (non-pA) pathway. We have used PAR-CLIP to map the positio …
Yeast RNA polymerase II (Pol II) terminates transcription of coding transcripts through the polyad …
Transcription-dependent enrichment of the yeast FACT complex influences nucleosome dynamics on the RNA polymerase III-transcribed genes.
RNA. 2020 Dec 4;27(3):273-90. doi: 10.1261/rna.077974.120. Online ahead of print.
RNA. 2020.
PMID: 33277439
Free PMC article.
The FACT (FAcilitates Chromatin Transactions) complex influences transcription initiation and enables passage of RNA polymerase (pol) II through gene body nucleosomes during elongation. ...As opposed to the enrichment at the 5'-ends of pol II-transcrib …
The FACT (FAcilitates Chromatin Transactions) complex influences transcription initiation and enables passage of RNA polymerase …
Gene-specific RNA polymerase II phosphorylation and the CTD code.
Nat Struct Mol Biol. 2010 Oct;17(10):1279-86. doi: 10.1038/nsmb.1913. Epub 2010 Sep 12.
Nat Struct Mol Biol. 2010.
PMID: 20835241
Free PMC article.
Phosphorylation of the RNA polymerase (Pol) II C-terminal domain (CTD) repeats (1-YSPTSPS-7) is coupled to transcription and may act as a 'code' that controls mRNA synthesis and processing. To examine the code in budding yeast, we mapped …
Phosphorylation of the RNA polymerase (Pol) II C-terminal domain (CTD) repeats (1-YSPTSPS-7) is coupled to trans …
Common genomic elements promote transcriptional and DNA replication roadblocks.
Genome Res. 2016 Oct;26(10):1363-1375. doi: 10.1101/gr.204776.116. Epub 2016 Aug 18.
Genome Res. 2016.
PMID: 27540088
Free PMC article.
RNA polymerase II (Pol II) transcription termination by the Nrd1p-Nab3p-Sen1p (NNS) pathway is critical for the production of stable noncoding RNAs and the control of pervasive transcription in Saccharomyces cerevisiae To uncover d …
RNA polymerase II (Pol II) transcription termination by the Nrd1p-Nab3p-Sen1p (NNS) pathway is critical f …
Promoter nucleosome dynamics regulated by signalling through the CTD code.
Elife. 2015 Jun 22;4:e09008. doi: 10.7554/eLife.09008.
Elife. 2015.
PMID: 26098123
Free PMC article.
The phosphorylation of the RNA polymerase II C-terminal domain (CTD) plays a key role in delineating transcribed regions within chromatin by recruiting histone methylases and deacetylases. Using genome-wide nucleosome mapping, we s …
The phosphorylation of the RNA polymerase II C-terminal domain (CTD) plays a key role in delineating transcribed …
FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner.
Mol Cell. 2021 Sep 2;81(17):3542-3559.e11. doi: 10.1016/j.molcel.2021.07.010. Epub 2021 Aug 10.
Mol Cell. 2021.
PMID: 34380014
Free PMC article.
How it is targeted to transcribed regions, however, remains unclear. Proposed models include docking on the RNA polymerase II (RNAPII) C-terminal domain (CTD), recruitment by elongation factors, recognition of modified histone tails, and binding partia …
How it is targeted to transcribed regions, however, remains unclear. Proposed models include docking on the RNA polymerase …
The yeast cap binding complex modulates transcription factor recruitment and establishes proper histone H3K36 trimethylation during active transcription.
Mol Cell Biol. 2013 Feb;33(4):785-99. doi: 10.1128/MCB.00947-12. Epub 2012 Dec 10.
Mol Cell Biol. 2013.
PMID: 23230273
Free PMC article.
Recent studies have revealed a close relationship between transcription, histone modification, and RNA processing. In fact, genome-wide analyses that correlate histone marks with RNA processing signals raise the possibility that specific RNA pro …
Recent studies have revealed a close relationship between transcription, histone modification, and RNA processing. In fact, genome …
Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation.
Proc Natl Acad Sci U S A. 2010 Oct 19;107(42):17945-50. doi: 10.1073/pnas.1012674107. Epub 2010 Oct 4.
Proc Natl Acad Sci U S A. 2010.
PMID: 20921369
Free PMC article.
Genome-wide mapping of nucleosomes generated by micrococcal nuclease (MNase) suggests that yeast promoter and terminator regions are very depleted of nucleosomes, predominantly because their DNA sequences intrinsically disfavor nucleosome format …
Genome-wide mapping of nucleosomes generated by micrococcal nuclease (MNase) suggests that yeast promoter and …
Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping.
Cell. 2016 Dec 1;167(6):1555-1570.e15. doi: 10.1016/j.cell.2016.10.049. Epub 2016 Nov 23.
Cell. 2016.
PMID: 27889238
Free PMC article.
Here, we develop a chemical biology approach to determine mammalian nucleosome positions genome-wide. We uncovered surprising features of nucleosome organization in mouse embryonic stem cells. ...Furthermore, we provide evidence that promoter-proximal nucleosomes, w …
Here, we develop a chemical biology approach to determine mammalian nucleosome positions genome-wide. We uncovered surprising …
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