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Inferring biological networks with output kernel trees.
Geurts P, Touleimat N, Dutreix M, d'Alché-Buc F. Geurts P, et al. BMC Bioinformatics. 2007 May 3;8 Suppl 2(Suppl 2):S4. doi: 10.1186/1471-2105-8-S2-S4. BMC Bioinformatics. 2007. PMID: 17493253 Free PMC article.
SCENIC: single-cell regulatory network inference and clustering.
Aibar S, González-Blas CB, Moerman T, Huynh-Thu VA, Imrichova H, Hulselmans G, Rambow F, Marine JC, Geurts P, Aerts J, van den Oord J, Atak ZK, Wouters J, Aerts S. Aibar S, et al. Among authors: geurts p. Nat Methods. 2017 Nov;14(11):1083-1086. doi: 10.1038/nmeth.4463. Epub 2017 Oct 9. Nat Methods. 2017. PMID: 28991892 Free PMC article.
Bridging physiological and evolutionary time-scales in a gene regulatory network.
Marchand G, Huynh-Thu VA, Kane NC, Arribat S, Varès D, Rengel D, Balzergue S, Rieseberg LH, Vincourt P, Geurts P, Vignes M, Langlade NB. Marchand G, et al. Among authors: geurts p. New Phytol. 2014 Jul;203(2):685-96. doi: 10.1111/nph.12818. Epub 2014 May 2. New Phytol. 2014. PMID: 24786523
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