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9,942 results
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Payao: a community platform for SBML pathway model curation.
Matsuoka Y, Ghosh S, Kikuchi N, Kitano H. Matsuoka Y, et al. Among authors: ghosh s. Bioinformatics. 2010 May 15;26(10):1381-3. doi: 10.1093/bioinformatics/btq143. Epub 2010 Apr 5. Bioinformatics. 2010. PMID: 20371497 Free PMC article.
Consistent design schematics for biological systems: standardization of representation in biological engineering.
Matsuoka Y, Ghosh S, Kitano H. Matsuoka Y, et al. Among authors: ghosh s. J R Soc Interface. 2009 Aug 6;6 Suppl 4(Suppl 4):S393-404. doi: 10.1098/rsif.2009.0046.focus. Epub 2009 Jun 3. J R Soc Interface. 2009. PMID: 19493898 Free PMC article. Review.
Social engineering for virtual 'big science' in systems biology.
Kitano H, Ghosh S, Matsuoka Y. Kitano H, et al. Among authors: ghosh s. Nat Chem Biol. 2011 Jun;7(6):323-6. doi: 10.1038/nchembio.574. Nat Chem Biol. 2011. PMID: 21587248 No abstract available.
Software for systems biology: from tools to integrated platforms.
Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H. Ghosh S, et al. Nat Rev Genet. 2011 Nov 3;12(12):821-32. doi: 10.1038/nrg3096. Nat Rev Genet. 2011. PMID: 22048662 Review.
AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease.
Mizuno S, Iijima R, Ogishima S, Kikuchi M, Matsuoka Y, Ghosh S, Miyamoto T, Miyashita A, Kuwano R, Tanaka H. Mizuno S, et al. Among authors: ghosh s. BMC Syst Biol. 2012 May 30;6:52. doi: 10.1186/1752-0509-6-52. BMC Syst Biol. 2012. PMID: 22647208 Free PMC article.
CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data.
Shoemaker JE, Lopes TJ, Ghosh S, Matsuoka Y, Kawaoka Y, Kitano H. Shoemaker JE, et al. Among authors: ghosh s. BMC Genomics. 2012 Sep 6;13:460. doi: 10.1186/1471-2164-13-460. BMC Genomics. 2012. PMID: 22953731 Free PMC article.
Integrating pathways of Parkinson's disease in a molecular interaction map.
Fujita KA, Ostaszewski M, Matsuoka Y, Ghosh S, Glaab E, Trefois C, Crespo I, Perumal TM, Jurkowski W, Antony PM, Diederich N, Buttini M, Kodama A, Satagopam VP, Eifes S, Del Sol A, Schneider R, Kitano H, Balling R. Fujita KA, et al. Among authors: ghosh s. Mol Neurobiol. 2014 Feb;49(1):88-102. doi: 10.1007/s12035-013-8489-4. Epub 2013 Jul 7. Mol Neurobiol. 2014. PMID: 23832570 Free PMC article. Review.
A comprehensive map of the influenza A virus replication cycle.
Matsuoka Y, Matsumae H, Katoh M, Eisfeld AJ, Neumann G, Hase T, Ghosh S, Shoemaker JE, Lopes TJ, Watanabe T, Watanabe S, Fukuyama S, Kitano H, Kawaoka Y. Matsuoka Y, et al. Among authors: ghosh s. BMC Syst Biol. 2013 Oct 2;7:97. doi: 10.1186/1752-0509-7-97. BMC Syst Biol. 2013. PMID: 24088197 Free PMC article.
Harnessing diversity towards the reconstructing of large scale gene regulatory networks.
Hase T, Ghosh S, Yamanaka R, Kitano H. Hase T, et al. Among authors: ghosh s. PLoS Comput Biol. 2013;9(11):e1003361. doi: 10.1371/journal.pcbi.1003361. Epub 2013 Nov 21. PLoS Comput Biol. 2013. PMID: 24278007 Free PMC article.
Combining machine learning systems and multiple docking simulation packages to improve docking prediction reliability for network pharmacology.
Hsin KY, Ghosh S, Kitano H. Hsin KY, et al. Among authors: ghosh s. PLoS One. 2013 Dec 31;8(12):e83922. doi: 10.1371/journal.pone.0083922. eCollection 2013. PLoS One. 2013. PMID: 24391846 Free PMC article.
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