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9,969 results
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Social engineering for virtual 'big science' in systems biology.
Kitano H, Ghosh S, Matsuoka Y. Kitano H, et al. Among authors: ghosh s. Nat Chem Biol. 2011 Jun;7(6):323-6. doi: 10.1038/nchembio.574. Nat Chem Biol. 2011. PMID: 21587248 No abstract available.
Consistent design schematics for biological systems: standardization of representation in biological engineering.
Matsuoka Y, Ghosh S, Kitano H. Matsuoka Y, et al. Among authors: ghosh s. J R Soc Interface. 2009 Aug 6;6 Suppl 4(Suppl 4):S393-404. doi: 10.1098/rsif.2009.0046.focus. Epub 2009 Jun 3. J R Soc Interface. 2009. PMID: 19493898 Free PMC article. Review.
The Systems Biology Graphical Notation.
Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, Matsuoka Y, Villéger A, Boyd SE, Calzone L, Courtot M, Dogrusoz U, Freeman TC, Funahashi A, Ghosh S, Jouraku A, Kim S, Kolpakov F, Luna A, Sahle S, Schmidt E, Watterson S, Wu G, Goryanin I, Kell DB, Sander C, Sauro H, Snoep JL, Kohn K, Kitano H. Le Novère N, et al. Among authors: ghosh s. Nat Biotechnol. 2009 Aug;27(8):735-41. doi: 10.1038/nbt.1558. Epub 2009 Aug 7. Nat Biotechnol. 2009. PMID: 19668183
Payao: a community platform for SBML pathway model curation.
Matsuoka Y, Ghosh S, Kikuchi N, Kitano H. Matsuoka Y, et al. Among authors: ghosh s. Bioinformatics. 2010 May 15;26(10):1381-3. doi: 10.1093/bioinformatics/btq143. Epub 2010 Apr 5. Bioinformatics. 2010. PMID: 20371497 Free PMC article.
Software for systems biology: from tools to integrated platforms.
Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H. Ghosh S, et al. Nat Rev Genet. 2011 Nov 3;12(12):821-32. doi: 10.1038/nrg3096. Nat Rev Genet. 2011. PMID: 22048662 Review.
AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease.
Mizuno S, Iijima R, Ogishima S, Kikuchi M, Matsuoka Y, Ghosh S, Miyamoto T, Miyashita A, Kuwano R, Tanaka H. Mizuno S, et al. Among authors: ghosh s. BMC Syst Biol. 2012 May 30;6:52. doi: 10.1186/1752-0509-6-52. BMC Syst Biol. 2012. PMID: 22647208 Free PMC article.
Integrating pathways of Parkinson's disease in a molecular interaction map.
Fujita KA, Ostaszewski M, Matsuoka Y, Ghosh S, Glaab E, Trefois C, Crespo I, Perumal TM, Jurkowski W, Antony PM, Diederich N, Buttini M, Kodama A, Satagopam VP, Eifes S, Del Sol A, Schneider R, Kitano H, Balling R. Fujita KA, et al. Among authors: ghosh s. Mol Neurobiol. 2014 Feb;49(1):88-102. doi: 10.1007/s12035-013-8489-4. Epub 2013 Jul 7. Mol Neurobiol. 2014. PMID: 23832570 Free PMC article. Review.
Harnessing diversity towards the reconstructing of large scale gene regulatory networks.
Hase T, Ghosh S, Yamanaka R, Kitano H. Hase T, et al. Among authors: ghosh s. PLoS Comput Biol. 2013;9(11):e1003361. doi: 10.1371/journal.pcbi.1003361. Epub 2013 Nov 21. PLoS Comput Biol. 2013. PMID: 24278007 Free PMC article.
A Geometric Clustering Tool (AGCT) to robustly unravel the inner cluster structures of time-series gene expressions.
Nock R, Polouliakh N, Nielsen F, Oka K, Connell CR, Heimhofer C, Shibanai K, Ghosh S, Aisaki KI, Kitajima S, Kanno J, Akama T, Kitano H. Nock R, et al. Among authors: ghosh s. PLoS One. 2020 Jul 6;15(7):e0233755. doi: 10.1371/journal.pone.0233755. eCollection 2020. PLoS One. 2020. PMID: 32628677 Free PMC article.
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