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Harnessing diversity towards the reconstructing of large scale gene regulatory networks.
Hase T, Ghosh S, Yamanaka R, Kitano H. Hase T, et al. Among authors: ghosh s. PLoS Comput Biol. 2013;9(11):e1003361. doi: 10.1371/journal.pcbi.1003361. Epub 2013 Nov 21. PLoS Comput Biol. 2013. PMID: 24278007 Free PMC article.
Consistent design schematics for biological systems: standardization of representation in biological engineering.
Matsuoka Y, Ghosh S, Kitano H. Matsuoka Y, et al. Among authors: ghosh s. J R Soc Interface. 2009 Aug 6;6 Suppl 4(Suppl 4):S393-404. doi: 10.1098/rsif.2009.0046.focus. Epub 2009 Jun 3. J R Soc Interface. 2009. PMID: 19493898 Free PMC article. Review.
Payao: a community platform for SBML pathway model curation.
Matsuoka Y, Ghosh S, Kikuchi N, Kitano H. Matsuoka Y, et al. Among authors: ghosh s. Bioinformatics. 2010 May 15;26(10):1381-3. doi: 10.1093/bioinformatics/btq143. Epub 2010 Apr 5. Bioinformatics. 2010. PMID: 20371497 Free PMC article.
A comprehensive molecular interaction map of the budding yeast cell cycle.
Kaizu K, Ghosh S, Matsuoka Y, Moriya H, Shimizu-Yoshida Y, Kitano H. Kaizu K, et al. Among authors: ghosh s. Mol Syst Biol. 2010 Sep 21;6:415. doi: 10.1038/msb.2010.73. Mol Syst Biol. 2010. PMID: 20865008 Free PMC article. Review.
Social engineering for virtual 'big science' in systems biology.
Kitano H, Ghosh S, Matsuoka Y. Kitano H, et al. Among authors: ghosh s. Nat Chem Biol. 2011 Jun;7(6):323-6. doi: 10.1038/nchembio.574. Nat Chem Biol. 2011. PMID: 21587248 No abstract available.
Software for systems biology: from tools to integrated platforms.
Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H. Ghosh S, et al. Nat Rev Genet. 2011 Nov 3;12(12):821-32. doi: 10.1038/nrg3096. Nat Rev Genet. 2011. PMID: 22048662 Review.
Integrating pathways of Parkinson's disease in a molecular interaction map.
Fujita KA, Ostaszewski M, Matsuoka Y, Ghosh S, Glaab E, Trefois C, Crespo I, Perumal TM, Jurkowski W, Antony PM, Diederich N, Buttini M, Kodama A, Satagopam VP, Eifes S, Del Sol A, Schneider R, Kitano H, Balling R. Fujita KA, et al. Among authors: ghosh s. Mol Neurobiol. 2014 Feb;49(1):88-102. doi: 10.1007/s12035-013-8489-4. Epub 2013 Jul 7. Mol Neurobiol. 2014. PMID: 23832570 Free PMC article. Review.
Parkinson's disease (PD) is a major neurodegenerative chronic disease, most likely caused by a complex interplay of genetic and environmental factors. ...
Parkinson's disease (PD) is a major neurodegenerative chronic disease, most likely caused by a complex interplay of genetic and envir …
A comprehensive map of the influenza A virus replication cycle.
Matsuoka Y, Matsumae H, Katoh M, Eisfeld AJ, Neumann G, Hase T, Ghosh S, Shoemaker JE, Lopes TJ, Watanabe T, Watanabe S, Fukuyama S, Kitano H, Kawaoka Y. Matsuoka Y, et al. Among authors: ghosh s. BMC Syst Biol. 2013 Oct 2;7:97. doi: 10.1186/1752-0509-7-97. BMC Syst Biol. 2013. PMID: 24088197 Free PMC article.
Combining machine learning systems and multiple docking simulation packages to improve docking prediction reliability for network pharmacology.
Hsin KY, Ghosh S, Kitano H. Hsin KY, et al. Among authors: ghosh s. PLoS One. 2013 Dec 31;8(12):e83922. doi: 10.1371/journal.pone.0083922. eCollection 2013. PLoS One. 2013. PMID: 24391846 Free PMC article.
A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data.
Hu Y, Hase T, Li HP, Prabhakar S, Kitano H, Ng SK, Ghosh S, Wee LJ. Hu Y, et al. Among authors: ghosh s. BMC Genomics. 2016 Dec 22;17(Suppl 13):1025. doi: 10.1186/s12864-016-3317-7. BMC Genomics. 2016. PMID: 28155657 Free PMC article.
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