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Clustal W and Clustal X version 2.0.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Larkin MA, et al. Bioinformatics. 2007 Nov 1;23(21):2947-8. doi: 10.1093/bioinformatics/btm404. Epub 2007 Sep 10. Bioinformatics. 2007. PMID: 17846036
Multiple sequence alignment using ClustalW and ClustalX.
Thompson JD, Gibson TJ, Higgins DG. Thompson JD, et al. Curr Protoc Bioinformatics. 2002 Aug;Chapter 2:Unit 2.3. doi: 10.1002/0471250953.bi0203s00. Curr Protoc Bioinformatics. 2002. PMID: 18792934
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.
Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG. Sievers F, et al. Mol Syst Biol. 2011 Oct 11;7:539. doi: 10.1038/msb.2011.75. Mol Syst Biol. 2011. PMID: 21988835 Free PMC article.
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. Thompson JD, et al. Nucleic Acids Res. 1997 Dec 15;25(24):4876-82. doi: 10.1093/nar/25.24.4876. Nucleic Acids Res. 1997. PMID: 9396791 Free PMC article.
Multiple sequence alignment with Clustal X.
Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ. Jeanmougin F, et al. Trends Biochem Sci. 1998 Oct;23(10):403-5. doi: 10.1016/s0968-0004(98)01285-7. Trends Biochem Sci. 1998. PMID: 9810230 No abstract available.
Divergent evolution of a protein-protein interaction revealed through ancestral sequence reconstruction and resurrection.
Laursen L, Čalyševa J, Gibson TJ, Jemth P. Laursen L, et al. Among authors: gibson tj. Mol Biol Evol. 2020 Aug 4:msaa198. doi: 10.1093/molbev/msaa198. Online ahead of print. Mol Biol Evol. 2020. PMID: 32750125
How to Annotate and Submit a Short Linear Motif to the Eukaryotic Linear Motif Resource.
Gouw M, Alvarado-Valverde J, Čalyševa J, Diella F, Kumar M, Michael S, Van Roey K, Dinkel H, Gibson TJ. Gouw M, et al. Among authors: gibson tj. Methods Mol Biol. 2020;2141:73-102. doi: 10.1007/978-1-0716-0524-0_4. Methods Mol Biol. 2020. PMID: 32696353
Evaluation of physical euthanasia for neonatal piglets on-farm.
Dalla Costa FA, Gibson TJ, Oliveira SEO, Gregory NG, Coldebella A, Faucitano L, Ludtke CB, Buss LP, Dalla Costa OA. Dalla Costa FA, et al. Among authors: gibson tj. J Anim Sci. 2020 Jul 1;98(7):skaa204. doi: 10.1093/jas/skaa204. J Anim Sci. 2020. PMID: 32620008
Total synthesis of (+)-pilosinine via a stereodivergent conjugate addition strategy.
Schrank CL, Danneman MW, Prebihalo EA, Anderson RE, Gibson TJ, Wuest WM, Mullins RJ. Schrank CL, et al. Among authors: gibson tj. Tetrahedron Lett. 2020 Jun 4;61(23):151945. doi: 10.1016/j.tetlet.2020.151945. Epub 2020 Apr 18. Tetrahedron Lett. 2020. PMID: 32528190
The articles.ELM resource: simplifying access to protein linear motif literature by annotation, text-mining and classification.
Palopoli N, Iserte JA, Chemes LB, Marino-Buslje C, Parisi G, Gibson TJ, Davey NE. Palopoli N, et al. Among authors: gibson tj. Database (Oxford). 2020 Jan 1;2020:baaa040. doi: 10.1093/database/baaa040. Database (Oxford). 2020. PMID: 32507889 Free PMC article.
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