Gifford R - Search Results

1

Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection.

Ho JSY, Angel M, Ma Y, Sloan E, Wang G, Martinez-Romero C, Alenquer M, Roudko V, Chung L, Zheng S, Chang M, Fstkchyan Y, Clohisey S, Dinan AM, Gibbs J, Gifford R, Shen R, Gu Q, Irigoyen N, Campisi L, Huang C, Zhao N, Jones JD, van Knippenberg I, Zhu Z, Moshkina N, Meyer L, Noel J, Peralta Z, Rezelj V, Kaake R, Rosenberg B, Wang B, Wei J, Paessler S, Wise HM, Johnson J, Vannini A, Amorim MJ, Baillie JK, Miraldi ER, Benner C, Brierley I, Digard P, Łuksza M, Firth AE, Krogan N, Greenbaum BD, MacLeod MK, van Bakel H, Garcìa-Sastre A, Yewdell JW, Hutchinson E, Marazzi I. Ho JSY, et al. Among authors: gifford r. Cell. 2020 Jun 25;181(7):1502-1517.e23. doi: 10.1016/j.cell.2020.05.035. Epub 2020 Jun 18. Cell. 2020. PMID: 32559462 Free PMC article.

2

Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses.

Shaw AE, Hughes J, Gu Q, Behdenna A, Singer JB, Dennis T, Orton RJ, Varela M, Gifford RJ, Wilson SJ, Palmarini M. Shaw AE, et al. PLoS Biol. 2017 Dec 18;15(12):e2004086. doi: 10.1371/journal.pbio.2004086. eCollection 2017 Dec. PLoS Biol. 2017. PMID: 29253856 Free PMC article.

3

SARS-CoV-2 ORF3b Is a Potent Interferon Antagonist Whose Activity Is Increased by a Naturally Occurring Elongation Variant.

Konno Y, Kimura I, Uriu K, Fukushi M, Irie T, Koyanagi Y, Sauter D, Gifford RJ; USFQ-COVID19 Consortium; Nakagawa S, Sato K. Konno Y, et al. Cell Rep. 2020 Sep 22;32(12):108185. doi: 10.1016/j.celrep.2020.108185. Epub 2020 Sep 4. Cell Rep. 2020. PMID: 32941788 Free PMC article.

4

No evidence of SARS-CoV-2 reverse transcription and integration as the origin of chimeric transcripts in patient tissues.

Parry R, Gifford RJ, Lytras S, Ray SC, Coin LJM. Parry R, et al. Among authors: gifford rj. Proc Natl Acad Sci U S A. 2021 Aug 17;118(33):e2109066118. doi: 10.1073/pnas.2109066118. Proc Natl Acad Sci U S A. 2021. PMID: 34344759 Free PMC article. No abstract available.

5

Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae).

Farkašová H, Hron T, Pačes J, Hulva P, Benda P, Gifford RJ, Elleder D. Farkašová H, et al. Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):3145-3150. doi: 10.1073/pnas.1621224114. Epub 2017 Mar 9. Proc Natl Acad Sci U S A. 2017. PMID: 28280099 Free PMC article.

6

Molecular Properties and Evolutionary Origins of a Parvovirus-Derived Myosin Fusion Gene in Guinea Pigs.

Valencia-Herrera I, Faunes F, Cena-Ahumada E, Ibarra-Karmy R, Gifford RJ, Arriagada G. Valencia-Herrera I, et al. Among authors: gifford rj. J Virol. 2019 Aug 13;93(17):e00404-19. doi: 10.1128/JVI.00404-19. Print 2019 Sep 1. J Virol. 2019. PMID: 31217242 Free PMC article.

7

Structures of the Hepaci-, Pegi-, and Pestiviruses envelope proteins suggest a novel membrane fusion mechanism.

Oliver MR, Toon K, Lewis CB, Devlin S, Gifford RJ, Grove J. Oliver MR, et al. Among authors: gifford rj. PLoS Biol. 2023 Jul 11;21(7):e3002174. doi: 10.1371/journal.pbio.3002174. eCollection 2023 Jul. PLoS Biol. 2023. PMID: 37432947 Free PMC article.

8

Examination and Reconstruction of Three Ancient Endogenous Parvovirus Capsid Protein Gene Remnants Found in Rodent Genomes.

Callaway HM, Subramanian S, Urbina CA, Barnard KN, Dick RA, Bator CM, Hafenstein SL, Gifford RJ, Parrish CR. Callaway HM, et al. Among authors: gifford rj. J Virol. 2019 Mar 5;93(6):e01542-18. doi: 10.1128/JVI.01542-18. Print 2019 Mar 15. J Virol. 2019. PMID: 30626673 Free PMC article.

9

Deltaretroviruses have circulated since at least the Paleogene and infected a broad range of mammalian species.

Hron T, Elleder D, Gifford RJ. Hron T, et al. Retrovirology. 2019 Nov 27;16(1):33. doi: 10.1186/s12977-019-0495-9. Retrovirology. 2019. PMID: 31775783 Free PMC article.

10

Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination.

Campbell K, Gifford RJ, Singer J, Hill V, O'Toole A, Rambaut A, Hampson K, Brunker K. Campbell K, et al. PLoS Pathog. 2022 May 2;18(5):e1010023. doi: 10.1371/journal.ppat.1010023. eCollection 2022 May. PLoS Pathog. 2022. PMID: 35500026 Free PMC article.

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