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When kinases meet mathematics: the systems biology of MAPK signalling.
Kolch W, Calder M, Gilbert D. Kolch W, et al. Among authors: gilbert d. FEBS Lett. 2005 Mar 21;579(8):1891-5. doi: 10.1016/j.febslet.2005.02.002. FEBS Lett. 2005. PMID: 15763569 Review.
Computational modelling reveals feedback redundancy within the epidermal growth factor receptor/extracellular-signal regulated kinase signalling pathway.
Orton RJ, Sturm OE, Gormand A, Wolch W, Gilbert DR. Orton RJ, et al. Among authors: gilbert dr. IET Syst Biol. 2008 Jul;2(4):173-83. doi: 10.1049/iet-syb:20070066. IET Syst Biol. 2008. PMID: 18681747
FrankSum: new feature selection method for protein function prediction.
Al-Shahib A, Breitling R, Gilbert D. Al-Shahib A, et al. Among authors: gilbert d. Int J Neural Syst. 2005 Aug;15(4):259-75. doi: 10.1142/S0129065705000281. Int J Neural Syst. 2005. PMID: 16187402
A novel method for comparing topological models of protein structures enhanced with ligand information.
Veeramalai M, Gilbert D. Veeramalai M, et al. Among authors: gilbert d. Bioinformatics. 2008 Dec 1;24(23):2698-705. doi: 10.1093/bioinformatics/btn518. Epub 2008 Oct 7. Bioinformatics. 2008. PMID: 18842602
Computational methodologies for modelling, analysis and simulation of signalling networks.
Gilbert D, Fuss H, Gu X, Orton R, Robinson S, Vyshemirsky V, Kurth MJ, Downes CS, Dubitzky W. Gilbert D, et al. Brief Bioinform. 2006 Dec;7(4):339-53. doi: 10.1093/bib/bbl043. Epub 2006 Nov 20. Brief Bioinform. 2006. PMID: 17116646 Review.
The mammalian MAPK/ERK pathway exhibits properties of a negative feedback amplifier.
Sturm OE, Orton R, Grindlay J, Birtwistle M, Vyshemirsky V, Gilbert D, Calder M, Pitt A, Kholodenko B, Kolch W. Sturm OE, et al. Among authors: gilbert d. Sci Signal. 2010 Dec 21;3(153):ra90. doi: 10.1126/scisignal.2001212. Sci Signal. 2010. PMID: 21177493
Cell fate decisions are specified by the dynamic ERK interactome.
von Kriegsheim A, Baiocchi D, Birtwistle M, Sumpton D, Bienvenut W, Morrice N, Yamada K, Lamond A, Kalna G, Orton R, Gilbert D, Kolch W. von Kriegsheim A, et al. Among authors: gilbert d. Nat Cell Biol. 2009 Dec;11(12):1458-64. doi: 10.1038/ncb1994. Epub 2009 Nov 22. Nat Cell Biol. 2009. PMID: 19935650 Free PMC article.
Computational modelling of kinase signalling cascades.
Gilbert D, Heiner M, Breitling R, Orton R. Gilbert D, et al. Methods Mol Biol. 2010;661:369-84. doi: 10.1007/978-1-60761-795-2_22. Methods Mol Biol. 2010. PMID: 20811995
A lock-and-key model for protein-protein interactions.
Morrison JL, Breitling R, Higham DJ, Gilbert DR. Morrison JL, et al. Among authors: gilbert dr. Bioinformatics. 2006 Aug 15;22(16):2012-9. doi: 10.1093/bioinformatics/btl338. Epub 2006 Jun 20. Bioinformatics. 2006. PMID: 16787977
Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway.
Orton RJ, Sturm OE, Vyshemirsky V, Calder M, Gilbert DR, Kolch W. Orton RJ, et al. Among authors: gilbert dr. Biochem J. 2005 Dec 1;392(Pt 2):249-61. doi: 10.1042/BJ20050908. Biochem J. 2005. PMID: 16293107 Free PMC article. Review.
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