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The Earth Microbiome project: successes and aspirations.
Gilbert JA, Jansson JK, Knight R. Gilbert JA, et al. BMC Biol. 2014 Aug 22;12:69. doi: 10.1186/s12915-014-0069-1. BMC Biol. 2014. PMID: 25184604 Free PMC article. No abstract available.
Systems biology of the human microbiome.
Peñalver Bernabé B, Cralle L, Gilbert JA. Peñalver Bernabé B, et al. Curr Opin Biotechnol. 2018 Jun;51:146-153. doi: 10.1016/j.copbio.2018.01.018. Epub 2018 Feb 14. Curr Opin Biotechnol. 2018. PMID: 29453029 Review.
Studying the microbiology of the indoor environment.
Kelley ST, Gilbert JA. Kelley ST, et al. Genome Biol. 2013 Feb 28;14(2):202. doi: 10.1186/gb-2013-14-2-202. Genome Biol. 2013. PMID: 23514020 Free PMC article. Review.
Identifying the plant-associated microbiome across aquatic and terrestrial environments: the effects of amplification method on taxa discovery.
Jackrel SL, Owens SM, Gilbert JA, Pfister CA. Jackrel SL, et al. Mol Ecol Resour. 2017 Sep;17(5):931-942. doi: 10.1111/1755-0998.12645. Epub 2017 Jan 25. Mol Ecol Resour. 2017. PMID: 27997751
A communal catalogue reveals Earth's multiscale microbial diversity.
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium. Thompson LR, et al. Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1. Nature. 2017. PMID: 29088705 Free PMC article.
Life in a World without Microbes.
Gilbert JA, Neufeld JD. Gilbert JA, et al. PLoS Biol. 2014 Dec 16;12(12):e1002020. doi: 10.1371/journal.pbio.1002020. eCollection 2014 Dec. PLoS Biol. 2014. PMID: 25513890 Free PMC article.
DNA extraction protocols cause differences in 16S rRNA amplicon sequencing efficiency but not in community profile composition or structure.
Rubin BE, Sanders JG, Hampton-Marcell J, Owens SM, Gilbert JA, Moreau CS. Rubin BE, et al. Microbiologyopen. 2014 Dec;3(6):910-21. doi: 10.1002/mbo3.216. Epub 2014 Sep 26. Microbiologyopen. 2014. PMID: 25257543 Free PMC article.
Understanding cultivar-specificity and soil determinants of the cannabis microbiome.
Winston ME, Hampton-Marcell J, Zarraonaindia I, Owens SM, Moreau CS, Gilbert JA, Hartsel JA, Kennedy SJ, Gibbons SM. Winston ME, et al. PLoS One. 2014 Jun 16;9(6):e99641. doi: 10.1371/journal.pone.0099641. eCollection 2014. PLoS One. 2014. PMID: 24932479 Free PMC article.
The gut of geographically disparate Ciona intestinalis harbors a core microbiota.
Dishaw LJ, Flores-Torres J, Lax S, Gemayel K, Leigh B, Melillo D, Mueller MG, Natale L, Zucchetti I, De Santis R, Pinto MR, Litman GW, Gilbert JA. Dishaw LJ, et al. PLoS One. 2014 Apr 2;9(4):e93386. doi: 10.1371/journal.pone.0093386. eCollection 2014. PLoS One. 2014. PMID: 24695540 Free PMC article.
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