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A novel algorithm and web-based tool for comparing two alternative phylogenetic trees.
Nye TM, LiĆ² P, Gilks WR. Nye TM, et al. Among authors: gilks wr. Bioinformatics. 2006 Jan 1;22(1):117-9. doi: 10.1093/bioinformatics/bti720. Epub 2005 Oct 18. Bioinformatics. 2006. PMID: 16234319
Fusing microarray experiments with multivariate regression.
Gilks WR, Tom BD, Brazma A. Gilks WR, et al. Bioinformatics. 2005 Sep 1;21 Suppl 2:ii137-43. doi: 10.1093/bioinformatics/bti1123. Bioinformatics. 2005. PMID: 16204093
Transcription binding site prediction using Markov models.
Abnizova I, Rust AG, Robinson M, Te Boekhorst R, Gilks WR. Abnizova I, et al. Among authors: gilks wr. J Bioinform Comput Biol. 2006 Apr;4(2):425-41. doi: 10.1142/s0219720006001813. J Bioinform Comput Biol. 2006. PMID: 16819793
Studying statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the eukaryotic genomes.
Abnizova I, Gilks WR. Abnizova I, et al. Among authors: gilks wr. Brief Bioinform. 2006 Mar;7(1):48-54. doi: 10.1093/bib/bbk004. Brief Bioinform. 2006. PMID: 16761364 Review.
Probabilistic annotation of protein sequences based on functional classifications.
Levy ED, Ouzounis CA, Gilks WR, Audit B. Levy ED, et al. Among authors: gilks wr. BMC Bioinformatics. 2005 Dec 14;6:302. doi: 10.1186/1471-2105-6-302. BMC Bioinformatics. 2005. PMID: 16354297 Free PMC article.
Quality determination and the repair of poor quality spots in array experiments.
Tom BD, Gilks WR, Brooke-Powell ET, Ajioka JW. Tom BD, et al. Among authors: gilks wr. BMC Bioinformatics. 2005 Sep 26;6:234. doi: 10.1186/1471-2105-6-234. BMC Bioinformatics. 2005. PMID: 16185360 Free PMC article.
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test.
Abnizova I, te Boekhorst R, Walter K, Gilks WR. Abnizova I, et al. Among authors: gilks wr. BMC Bioinformatics. 2005 Apr 27;6:109. doi: 10.1186/1471-2105-6-109. BMC Bioinformatics. 2005. PMID: 15857505 Free PMC article.
Modeling the percolation of annotation errors in a database of protein sequences.
Gilks WR, Audit B, De Angelis D, Tsoka S, Ouzounis CA. Gilks WR, et al. Bioinformatics. 2002 Dec;18(12):1641-9. doi: 10.1093/bioinformatics/18.12.1641. Bioinformatics. 2002. PMID: 12490449
Statistical analysis of domains in interacting protein pairs.
Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann SA. Nye TM, et al. Among authors: gilks wr. Bioinformatics. 2005 Apr 1;21(7):993-1001. doi: 10.1093/bioinformatics/bti086. Epub 2004 Oct 27. Bioinformatics. 2005. PMID: 15509600
Predicting the strongest domain-domain contact in interacting protein pairs.
Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann S. Nye TM, et al. Among authors: gilks wr. Stat Appl Genet Mol Biol. 2006;5:Article5. doi: 10.2202/1544-6115.1195. Epub 2006 Feb 24. Stat Appl Genet Mol Biol. 2006. PMID: 16646869
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