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Detecting distant homology with Meta-BASIC.
Ginalski K, von Grotthuss M, Grishin NV, Rychlewski L. Ginalski K, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W576-81. doi: 10.1093/nar/gkh370. Nucleic Acids Res. 2004. PMID: 15215454 Free PMC article.
Comprehensive classification of the PIN domain-like superfamily.
Matelska D, Steczkiewicz K, Ginalski K. Matelska D, et al. Among authors: ginalski k. Nucleic Acids Res. 2017 Jul 7;45(12):6995-7020. doi: 10.1093/nar/gkx494. Nucleic Acids Res. 2017. PMID: 28575517 Free PMC article.
FAM46 proteins are novel eukaryotic non-canonical poly(A) polymerases.
Kuchta K, Muszewska A, Knizewski L, Steczkiewicz K, Wyrwicz LS, Pawlowski K, Rychlewski L, Ginalski K. Kuchta K, et al. Among authors: ginalski k. Nucleic Acids Res. 2016 May 5;44(8):3534-48. doi: 10.1093/nar/gkw222. Epub 2016 Apr 7. Nucleic Acids Res. 2016. PMID: 27060136 Free PMC article.
Systematic classification of the His-Me finger superfamily.
Jablonska J, Matelska D, Steczkiewicz K, Ginalski K. Jablonska J, et al. Among authors: ginalski k. Nucleic Acids Res. 2017 Nov 16;45(20):11479-11494. doi: 10.1093/nar/gkx924. Nucleic Acids Res. 2017. PMID: 29040665 Free PMC article.
Comprehensive classification of nucleotidyltransferase fold proteins: identification of novel families and their representatives in human.
Kuchta K, Knizewski L, Wyrwicz LS, Rychlewski L, Ginalski K. Kuchta K, et al. Among authors: ginalski k. Nucleic Acids Res. 2009 Dec;37(22):7701-14. doi: 10.1093/nar/gkp854. Nucleic Acids Res. 2009. PMID: 19833706 Free PMC article.
Comparative modeling for protein structure prediction.
Ginalski K. Ginalski K. Curr Opin Struct Biol. 2006 Apr;16(2):172-7. doi: 10.1016/j.sbi.2006.02.003. Epub 2006 Feb 28. Curr Opin Struct Biol. 2006. PMID: 16510277 Review.
Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches.
Knizewski L, Kinch LN, Grishin NV, Rychlewski L, Ginalski K. Knizewski L, et al. Among authors: ginalski k. BMC Struct Biol. 2007 Jun 20;7:40. doi: 10.1186/1472-6807-7-40. BMC Struct Biol. 2007. PMID: 17584917 Free PMC article.
Identification of novel restriction endonuclease-like fold families among hypothetical proteins.
Kinch LN, Ginalski K, Rychlewski L, Grishin NV. Kinch LN, et al. Among authors: ginalski k. Nucleic Acids Res. 2005 Jun 22;33(11):3598-605. doi: 10.1093/nar/gki676. Print 2005. Nucleic Acids Res. 2005. PMID: 15972856 Free PMC article.
A comprehensive update of the sequence and structure classification of kinases.
Cheek S, Ginalski K, Zhang H, Grishin NV. Cheek S, et al. Among authors: ginalski k. BMC Struct Biol. 2005 Mar 16;5:6. doi: 10.1186/1472-6807-5-6. BMC Struct Biol. 2005. PMID: 15771780 Free PMC article.
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