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Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Altschul SF, et al. Among authors: gish w. J Mol Biol. 1990 Oct 5;215(3):403-10. doi: 10.1016/S0022-2836(05)80360-2. J Mol Biol. 1990. PMID: 2231712
Combined use of sequence similarity and codon bias for coding region identification.
States DJ, Gish W. States DJ, et al. Among authors: gish w. J Comput Biol. 1994 Spring;1(1):39-50. doi: 10.1089/cmb.1994.1.39. J Comput Biol. 1994. PMID: 8790452
Local alignment statistics.
Altschul SF, Gish W. Altschul SF, et al. Among authors: gish w. Methods Enzymol. 1996;266:460-80. doi: 10.1016/s0076-6879(96)66029-7. Methods Enzymol. 1996. PMID: 8743700 No abstract available.
Identification of protein coding regions by database similarity search.
Gish W, States DJ. Gish W, et al. Nat Genet. 1993 Mar;3(3):266-72. doi: 10.1038/ng0393-266. Nat Genet. 1993. PMID: 8485583
Issues in searching molecular sequence databases.
Altschul SF, Boguski MS, Gish W, Wootton JC. Altschul SF, et al. Among authors: gish w. Nat Genet. 1994 Feb;6(2):119-29. doi: 10.1038/ng0294-119. Nat Genet. 1994. PMID: 8162065 Review.
The DNA sequence of human chromosome 7.
Hillier LW, Fulton RS, Fulton LA, Graves TA, Pepin KH, Wagner-McPherson C, Layman D, Maas J, Jaeger S, Walker R, Wylie K, Sekhon M, Becker MC, O'Laughlin MD, Schaller ME, Fewell GA, Delehaunty KD, Miner TL, Nash WE, Cordes M, Du H, Sun H, Edwards J, Bradshaw-Cordum H, Ali J, Andrews S, Isak A, Vanbrunt A, Nguyen C, Du F, Lamar B, Courtney L, Kalicki J, Ozersky P, Bielicki L, Scott K, Holmes A, Harkins R, Harris A, Strong CM, Hou S, Tomlinson C, Dauphin-Kohlberg S, Kozlowicz-Reilly A, Leonard S, Rohlfing T, Rock SM, Tin-Wollam AM, Abbott A, Minx P, Maupin R, Strowmatt C, Latreille P, Miller N, Johnson D, Murray J, Woessner JP, Wendl MC, Yang SP, Schultz BR, Wallis JW, Spieth J, Bieri TA, Nelson JO, Berkowicz N, Wohldmann PE, Cook LL, Hickenbotham MT, Eldred J, Williams D, Bedell JA, Mardis ER, Clifton SW, Chissoe SL, Marra MA, Raymond C, Haugen E, Gillett W, Zhou Y, James R, Phelps K, Iadanoto S, Bubb K, Simms E, Levy R, Clendenning J, Kaul R, Kent WJ, Furey TS, Baertsch RA, Brent MR, Keibler E, Flicek P, Bork P, Suyama M, Bailey JA, Portnoy ME, Torrents D, Chinwalla AT, Gish WR, Eddy SR, McPherson JD, Olson MV, Eichler EE, Green ED, Waterston RH, Wilson RK. Hillier LW, et al. Among authors: gish wr. Nature. 2003 Jul 10;424(6945):157-64. doi: 10.1038/nature01782. Nature. 2003. PMID: 12853948
UTR reconstruction and analysis using genomically aligned EST sequences.
Kan Z, Gish W, Rouchka E, Glasscock J, States D. Kan Z, et al. Among authors: gish w. Proc Int Conf Intell Syst Mol Biol. 2000;8:218-27. Proc Int Conf Intell Syst Mol Biol. 2000. PMID: 10977083
Generation and analysis of 280,000 human expressed sequence tags.
Hillier LD, Lennon G, Becker M, Bonaldo MF, Chiapelli B, Chissoe S, Dietrich N, DuBuque T, Favello A, Gish W, Hawkins M, Hultman M, Kucaba T, Lacy M, Le M, Le N, Mardis E, Moore B, Morris M, Parsons J, Prange C, Rifkin L, Rohlfing T, Schellenberg K, Bento Soares M, Tan F, Thierry-Meg J, Trevaskis E, Underwood K, Wohldman P, Waterston R, Wilson R, Marra M. Hillier LD, et al. Among authors: gish w. Genome Res. 1996 Sep;6(9):807-28. doi: 10.1101/gr.6.9.807. Genome Res. 1996. PMID: 8889549
MaskerAid: a performance enhancement to RepeatMasker.
Bedell JA, Korf I, Gish W. Bedell JA, et al. Among authors: gish w. Bioinformatics. 2000 Nov;16(11):1040-1. doi: 10.1093/bioinformatics/16.11.1040. Bioinformatics. 2000. PMID: 11159316
MPBLAST : improved BLAST performance with multiplexed queries.
Korf I, Gish W. Korf I, et al. Among authors: gish w. Bioinformatics. 2000 Nov;16(11):1052-3. doi: 10.1093/bioinformatics/16.11.1052. Bioinformatics. 2000. PMID: 11159321
AVAILABILITY: Free (see http://blast.wustl.edu) CONTACT: [ikorf, gish]@watson.wustl.edu...
AVAILABILITY: Free (see http://blast.wustl.edu) CONTACT: [ikorf, gish]@watson.wustl.edu...
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