Gnirke A - Search Results

1

ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth.

Markljung E, Jiang L, Jaffe JD, Mikkelsen TS, Wallerman O, Larhammar M, Zhang X, Wang L, Saenz-Vash V, Gnirke A, Lindroth AM, Barrés R, Yan J, Strömberg S, De S, Pontén F, Lander ES, Carr SA, Zierath JR, Kullander K, Wadelius C, Lindblad-Toh K, Andersson G, Hjälm G, Andersson L. Markljung E, et al. Among authors: gnirke a. PLoS Biol. 2009 Dec;7(12):e1000256. doi: 10.1371/journal.pbio.1000256. Epub 2009 Dec 15. PLoS Biol. 2009. PMID: 20016685 Free PMC article.

2

Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites.

Xie X, Mikkelsen TS, Gnirke A, Lindblad-Toh K, Kellis M, Lander ES. Xie X, et al. Among authors: gnirke a. Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):7145-50. doi: 10.1073/pnas.0701811104. Epub 2007 Apr 18. Proc Natl Acad Sci U S A. 2007. PMID: 17442748 Free PMC article.

3

Genome-scale DNA methylation maps of pluripotent and differentiated cells.

Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, Sivachenko A, Zhang X, Bernstein BE, Nusbaum C, Jaffe DB, Gnirke A, Jaenisch R, Lander ES. Meissner A, et al. Among authors: gnirke a. Nature. 2008 Aug 7;454(7205):766-70. doi: 10.1038/nature07107. Epub 2008 Jul 6. Nature. 2008. PMID: 18600261 Free PMC article.

4

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay.

Melnikov A, Murugan A, Zhang X, Tesileanu T, Wang L, Rogov P, Feizi S, Gnirke A, Callan CG Jr, Kinney JB, Kellis M, Lander ES, Mikkelsen TS. Melnikov A, et al. Among authors: gnirke a. Nat Biotechnol. 2012 Feb 26;30(3):271-7. doi: 10.1038/nbt.2137. Nat Biotechnol. 2012. PMID: 22371084 Free PMC article.

5

Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution.

Gu H, Bock C, Mikkelsen TS, Jäger N, Smith ZD, Tomazou E, Gnirke A, Lander ES, Meissner A. Gu H, et al. Among authors: gnirke a. Nat Methods. 2010 Feb;7(2):133-6. doi: 10.1038/nmeth.1414. Epub 2010 Jan 10. Nat Methods. 2010. PMID: 20062050 Free PMC article.

6

Hi-C: a method to study the three-dimensional architecture of genomes.

van Berkum NL, Lieberman-Aiden E, Williams L, Imakaev M, Gnirke A, Mirny LA, Dekker J, Lander ES. van Berkum NL, et al. Among authors: gnirke a. J Vis Exp. 2010 May 6;(39):1869. doi: 10.3791/1869. J Vis Exp. 2010. PMID: 20461051 Free PMC article.

7

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis.

Meissner A, Gnirke A, Bell GW, Ramsahoye B, Lander ES, Jaenisch R. Meissner A, et al. Among authors: gnirke a. Nucleic Acids Res. 2005 Oct 13;33(18):5868-77. doi: 10.1093/nar/gki901. Print 2005. Nucleic Acids Res. 2005. PMID: 16224102 Free PMC article.

8

Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes.

Melnikov A, Rogov P, Wang L, Gnirke A, Mikkelsen TS. Melnikov A, et al. Among authors: gnirke a. Nucleic Acids Res. 2014 Aug;42(14):e112. doi: 10.1093/nar/gku511. Epub 2014 Jun 9. Nucleic Acids Res. 2014. PMID: 24914046 Free PMC article.

9

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.

Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, Adiconis X, Fan L, Koziol MJ, Gnirke A, Nusbaum C, Rinn JL, Lander ES, Regev A. Guttman M, et al. Among authors: gnirke a. Nat Biotechnol. 2010 May;28(5):503-10. doi: 10.1038/nbt.1633. Epub 2010 May 2. Nat Biotechnol. 2010. PMID: 20436462 Free PMC article.

10

A unique regulatory phase of DNA methylation in the early mammalian embryo.

Smith ZD, Chan MM, Mikkelsen TS, Gu H, Gnirke A, Regev A, Meissner A. Smith ZD, et al. Among authors: gnirke a. Nature. 2012 Mar 28;484(7394):339-44. doi: 10.1038/nature10960. Nature. 2012. PMID: 22456710 Free PMC article.

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