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98 results
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L1 penalized estimation in the Cox proportional hazards model.
Goeman JJ. Goeman JJ. Biom J. 2010 Feb;52(1):70-84. doi: 10.1002/bimj.200900028. Biom J. 2010. PMID: 19937997
A global test for groups of genes: testing association with a clinical outcome.
Goeman JJ, van de Geer SA, de Kort F, van Houwelingen HC. Goeman JJ, et al. Bioinformatics. 2004 Jan 1;20(1):93-9. doi: 10.1093/bioinformatics/btg382. Bioinformatics. 2004. PMID: 14693814
Enhancing scatterplots with smoothed densities.
Eilers PH, Goeman JJ. Eilers PH, et al. Among authors: goeman jj. Bioinformatics. 2004 Mar 22;20(5):623-8. doi: 10.1093/bioinformatics/btg454. Epub 2004 Jan 22. Bioinformatics. 2004. PMID: 15033868
Testing association of a pathway with survival using gene expression data.
Goeman JJ, Oosting J, Cleton-Jansen AM, Anninga JK, van Houwelingen HC. Goeman JJ, et al. Bioinformatics. 2005 May 1;21(9):1950-7. doi: 10.1093/bioinformatics/bti267. Epub 2005 Jan 18. Bioinformatics. 2005. PMID: 15657105
Analyzing gene expression data in terms of gene sets: methodological issues.
Goeman JJ, B├╝hlmann P. Goeman JJ, et al. Bioinformatics. 2007 Apr 15;23(8):980-7. doi: 10.1093/bioinformatics/btm051. Epub 2007 Feb 15. Bioinformatics. 2007. PMID: 17303618
Multiple testing on the directed acyclic graph of gene ontology.
Goeman JJ, Mansmann U. Goeman JJ, et al. Bioinformatics. 2008 Feb 15;24(4):537-44. doi: 10.1093/bioinformatics/btm628. Epub 2008 Jan 18. Bioinformatics. 2008. PMID: 18203773
Autocorrelated logistic ridge regression for prediction based on proteomics spectra.
Goeman JJ. Goeman JJ. Stat Appl Genet Mol Biol. 2008;7(2):Article10. doi: 10.2202/1544-6115.1344. Epub 2008 Feb 21. Stat Appl Genet Mol Biol. 2008. PMID: 18312215
Gene-expression of metastasized versus non-metastasized primary head and neck squamous cell carcinomas: a pathway-based analysis.
Hensen EF, De Herdt MJ, Goeman JJ, Oosting J, Smit VT, Cornelisse CJ, Baatenburg de Jong RJ. Hensen EF, et al. Among authors: goeman jj. BMC Cancer. 2008 Jun 10;8:168. doi: 10.1186/1471-2407-8-168. BMC Cancer. 2008. PMID: 18544165 Free PMC article.
Deep sequencing to reveal new variants in pooled DNA samples.
Out AA, van Minderhout IJ, Goeman JJ, Ariyurek Y, Ossowski S, Schneeberger K, Weigel D, van Galen M, Taschner PE, Tops CM, Breuning MH, van Ommen GJ, den Dunnen JT, Devilee P, Hes FJ. Out AA, et al. Among authors: goeman jj. Hum Mutat. 2009 Dec;30(12):1703-12. doi: 10.1002/humu.21122. Hum Mutat. 2009. PMID: 19842214
Literature-aided interpretation of gene expression data with the weighted global test.
Jelier R, Goeman JJ, Hettne KM, Schuemie MJ, den Dunnen JT, 't Hoen PA. Jelier R, et al. Among authors: goeman jj. Brief Bioinform. 2011 Sep;12(5):518-29. doi: 10.1093/bib/bbq082. Epub 2010 Dec 22. Brief Bioinform. 2011. PMID: 21183478 Review.
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