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Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
Nei M, Gojobori T. Nei M, et al. Among authors: gojobori t. Mol Biol Evol. 1986 Sep;3(5):418-26. doi: 10.1093/oxfordjournals.molbev.a040410. Mol Biol Evol. 1986. PMID: 3444411
A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses.
Kryukov K, Sumiyama K, Ikeo K, Gojobori T, Saitou N. Kryukov K, et al. Among authors: gojobori t. Genome Biol Evol. 2012;4(4):501-12. doi: 10.1093/gbe/evs026. Epub 2012 Mar 14. Genome Biol Evol. 2012. PMID: 22417913 Free PMC article.
Evolutionary pattern of gene homogenization between primate-specific paralogs after human and macaque speciation using the 4-2-4 method.
Ezawa K, Ikeo K, Gojobori T, Saitou N. Ezawa K, et al. Among authors: gojobori t. Mol Biol Evol. 2010 Sep;27(9):2152-71. doi: 10.1093/molbev/msq109. Epub 2010 Apr 29. Mol Biol Evol. 2010. PMID: 20430861
Methods for incorporating the hypermutability of CpG dinucleotides in detecting natural selection operating at the amino acid sequence level.
Suzuki Y, Gojobori T, Kumar S. Suzuki Y, et al. Among authors: gojobori t. Mol Biol Evol. 2009 Oct;26(10):2275-84. doi: 10.1093/molbev/msp133. Epub 2009 Jul 6. Mol Biol Evol. 2009. PMID: 19581348 Free PMC article.
Cilium evolution: identification of a novel protein, nematocilin, in the mechanosensory cilium of Hydra nematocytes.
Hwang JS, Takaku Y, Chapman J, Ikeo K, David CN, Gojobori T. Hwang JS, et al. Among authors: gojobori t. Mol Biol Evol. 2008 Sep;25(9):2009-17. doi: 10.1093/molbev/msn154. Epub 2008 Jul 17. Mol Biol Evol. 2008. PMID: 18635678
Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs.
Osada N, Hirata M, Tanuma R, Kusuda J, Hida M, Suzuki Y, Sugano S, Gojobori T, Shen CK, Wu CI, Hashimoto K. Osada N, et al. Among authors: gojobori t. Mol Biol Evol. 2005 Oct;22(10):1976-82. doi: 10.1093/molbev/msi187. Epub 2005 Jun 8. Mol Biol Evol. 2005. PMID: 15944441
A large variation in the rates of synonymous substitution for RNA viruses and its relationship to a diversity of viral infection and transmission modes.
Hanada K, Suzuki Y, Gojobori T. Hanada K, et al. Among authors: gojobori t. Mol Biol Evol. 2004 Jun;21(6):1074-80. doi: 10.1093/molbev/msh109. Epub 2004 Mar 10. Mol Biol Evol. 2004. PMID: 15014142 Free PMC article.
Dynamic evolution of endogenous retrovirus-derived genes expressed in bovine conceptuses during the period of placentation.
Nakagawa S, Bai H, Sakurai T, Nakaya Y, Konno T, Miyazawa T, Gojobori T, Imakawa K. Nakagawa S, et al. Among authors: gojobori t. Genome Biol Evol. 2013;5(2):296-306. doi: 10.1093/gbe/evt007. Genome Biol Evol. 2013. PMID: 23335121 Free PMC article.
Search for the evolutionary origin of a brain: planarian brain characterized by microarray.
Nakazawa M, CebriĆ  F, Mineta K, Ikeo K, Agata K, Gojobori T. Nakazawa M, et al. Among authors: gojobori t. Mol Biol Evol. 2003 May;20(5):784-91. doi: 10.1093/molbev/msg086. Epub 2003 Apr 2. Mol Biol Evol. 2003. PMID: 12679532
Compensatory change of interacting amino acids in the coevolution of transcriptional coactivator MBF1 and TATA-box-binding protein.
Liu QX, Nakashima-Kamimura N, Ikeo K, Hirose S, Gojobori T. Liu QX, et al. Among authors: gojobori t. Mol Biol Evol. 2007 Jul;24(7):1458-63. doi: 10.1093/molbev/msm073. Epub 2007 Apr 17. Mol Biol Evol. 2007. PMID: 17440176
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