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Large-scale search for genes on which positive selection may operate.
Endo T, Ikeo K, Gojobori T. Endo T, et al. Among authors: gojobori t. Mol Biol Evol. 1996 May;13(5):685-90. doi: 10.1093/oxfordjournals.molbev.a025629. Mol Biol Evol. 1996. PMID: 8676743
Biased biological functions of horizontally transferred genes in prokaryotic genomes.
Nakamura Y, Itoh T, Matsuda H, Gojobori T. Nakamura Y, et al. Among authors: gojobori t. Nat Genet. 2004 Jul;36(7):760-6. doi: 10.1038/ng1381. Epub 2004 Jun 20. Nat Genet. 2004. PMID: 15208628
A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses.
Kryukov K, Sumiyama K, Ikeo K, Gojobori T, Saitou N. Kryukov K, et al. Among authors: gojobori t. Genome Biol Evol. 2012;4(4):501-12. doi: 10.1093/gbe/evs026. Epub 2012 Mar 14. Genome Biol Evol. 2012. PMID: 22417913 Free PMC article.
Evolution of bioluminescence in marine planktonic copepods.
Takenaka Y, Yamaguchi A, Tsuruoka N, Torimura M, Gojobori T, Shigeri Y. Takenaka Y, et al. Among authors: gojobori t. Mol Biol Evol. 2012 Jun;29(6):1669-81. doi: 10.1093/molbev/mss009. Epub 2012 Jan 12. Mol Biol Evol. 2012. PMID: 22319154
Evolutionary pattern of gene homogenization between primate-specific paralogs after human and macaque speciation using the 4-2-4 method.
Ezawa K, Ikeo K, Gojobori T, Saitou N. Ezawa K, et al. Among authors: gojobori t. Mol Biol Evol. 2010 Sep;27(9):2152-71. doi: 10.1093/molbev/msq109. Epub 2010 Apr 29. Mol Biol Evol. 2010. PMID: 20430861
Methods for incorporating the hypermutability of CpG dinucleotides in detecting natural selection operating at the amino acid sequence level.
Suzuki Y, Gojobori T, Kumar S. Suzuki Y, et al. Among authors: gojobori t. Mol Biol Evol. 2009 Oct;26(10):2275-84. doi: 10.1093/molbev/msp133. Epub 2009 Jul 6. Mol Biol Evol. 2009. PMID: 19581348 Free PMC article.
Cilium evolution: identification of a novel protein, nematocilin, in the mechanosensory cilium of Hydra nematocytes.
Hwang JS, Takaku Y, Chapman J, Ikeo K, David CN, Gojobori T. Hwang JS, et al. Among authors: gojobori t. Mol Biol Evol. 2008 Sep;25(9):2009-17. doi: 10.1093/molbev/msn154. Epub 2008 Jul 17. Mol Biol Evol. 2008. PMID: 18635678
Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs.
Osada N, Hirata M, Tanuma R, Kusuda J, Hida M, Suzuki Y, Sugano S, Gojobori T, Shen CK, Wu CI, Hashimoto K. Osada N, et al. Among authors: gojobori t. Mol Biol Evol. 2005 Oct;22(10):1976-82. doi: 10.1093/molbev/msi187. Epub 2005 Jun 8. Mol Biol Evol. 2005. PMID: 15944441
Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level.
Nishio Y, Nakamura Y, Usuda Y, Sugimoto S, Matsui K, Kawarabayasi Y, Kikuchi H, Gojobori T, Ikeo K. Nishio Y, et al. Among authors: gojobori t. Mol Biol Evol. 2004 Sep;21(9):1683-91. doi: 10.1093/molbev/msh175. Epub 2004 May 26. Mol Biol Evol. 2004. PMID: 15163767
A large variation in the rates of synonymous substitution for RNA viruses and its relationship to a diversity of viral infection and transmission modes.
Hanada K, Suzuki Y, Gojobori T. Hanada K, et al. Among authors: gojobori t. Mol Biol Evol. 2004 Jun;21(6):1074-80. doi: 10.1093/molbev/msh109. Epub 2004 Mar 10. Mol Biol Evol. 2004. PMID: 15014142 Free PMC article.
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