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LocTree2 predicts localization for all domains of life.
Goldberg T, Hamp T, Rost B. Goldberg T, et al. Bioinformatics. 2012 Sep 15;28(18):i458-i465. doi: 10.1093/bioinformatics/bts390. Bioinformatics. 2012. PMID: 22962467 Free PMC article.
Accelerating the Original Profile Kernel.
Hamp T, Goldberg T, Rost B. Hamp T, et al. Among authors: goldberg t. PLoS One. 2013 Jun 18;8(6):e68459. doi: 10.1371/journal.pone.0068459. Print 2013. PLoS One. 2013. PMID: 23825697 Free PMC article.
PredictProtein--an open resource for online prediction of protein structural and functional features.
Yachdav G, Kloppmann E, Kajan L, Hecht M, Goldberg T, Hamp T, Hönigschmid P, Schafferhans A, Roos M, Bernhofer M, Richter L, Ashkenazy H, Punta M, Schlessinger A, Bromberg Y, Schneider R, Vriend G, Sander C, Ben-Tal N, Rost B. Yachdav G, et al. Among authors: goldberg t. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W337-43. doi: 10.1093/nar/gku366. Epub 2014 May 5. Nucleic Acids Res. 2014. PMID: 24799431 Free PMC article.
LocTree3 prediction of localization.
Goldberg T, Hecht M, Hamp T, Karl T, Yachdav G, Ahmed N, Altermann U, Angerer P, Ansorge S, Balasz K, Bernhofer M, Betz A, Cizmadija L, Do KT, Gerke J, Greil R, Joerdens V, Hastreiter M, Hembach K, Herzog M, Kalemanov M, Kluge M, Meier A, Nasir H, Neumaier U, Prade V, Reeb J, Sorokoumov A, Troshani I, Vorberg S, Waldraff S, Zierer J, Nielsen H, Rost B. Goldberg T, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W350-5. doi: 10.1093/nar/gku396. Epub 2014 May 21. Nucleic Acids Res. 2014. PMID: 24848019 Free PMC article.
MSAViewer: interactive JavaScript visualization of multiple sequence alignments.
Yachdav G, Wilzbach S, Rauscher B, Sheridan R, Sillitoe I, Procter J, Lewis SE, Rost B, Goldberg T. Yachdav G, et al. Among authors: goldberg t. Bioinformatics. 2016 Nov 15;32(22):3501-3503. doi: 10.1093/bioinformatics/btw474. Epub 2016 Jul 13. Bioinformatics. 2016. PMID: 27412096 Free PMC article.
Computational prediction shines light on type III secretion origins.
Goldberg T, Rost B, Bromberg Y. Goldberg T, et al. Sci Rep. 2016 Oct 7;6:34516. doi: 10.1038/srep34516. Sci Rep. 2016. PMID: 27713481 Free PMC article.
NLSdb-major update for database of nuclear localization signals and nuclear export signals.
Bernhofer M, Goldberg T, Wolf S, Ahmed M, Zaugg J, Boden M, Rost B. Bernhofer M, et al. Among authors: goldberg t. Nucleic Acids Res. 2018 Jan 4;46(D1):D503-D508. doi: 10.1093/nar/gkx1021. Nucleic Acids Res. 2018. PMID: 29106588 Free PMC article.
LocText: relation extraction of protein localizations to assist database curation.
Cejuela JM, Vinchurkar S, Goldberg T, Prabhu Shankar MS, Baghudana A, Bojchevski A, Uhlig C, Ofner A, Raharja-Liu P, Jensen LJ, Rost B. Cejuela JM, et al. Among authors: goldberg t. BMC Bioinformatics. 2018 Jan 17;19(1):15. doi: 10.1186/s12859-018-2021-9. BMC Bioinformatics. 2018. PMID: 29343218 Free PMC article.
Detailed prediction of protein sub-nuclear localization.
Littmann M, Goldberg T, Seitz S, Bodén M, Rost B. Littmann M, et al. Among authors: goldberg t. BMC Bioinformatics. 2019 Apr 23;20(1):205. doi: 10.1186/s12859-019-2790-9. BMC Bioinformatics. 2019. PMID: 31014229 Free PMC article.
Correction to: Detailed prediction of protein sub-nuclear localization.
Littmann M, Goldberg T, Seitz S, Bodén M, Rost B. Littmann M, et al. Among authors: goldberg t. BMC Bioinformatics. 2019 Dec 20;20(1):727. doi: 10.1186/s12859-019-3305-4. BMC Bioinformatics. 2019. PMID: 31861997 Free PMC article.
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