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The Bacillaceae-1 RNA motif comprises two distinct classes.
González-Tortuero E, Anthon C, Havgaard JH, Geissler AS, Breüner A, Hjort C, Gorodkin J, Seemann SE. González-Tortuero E, et al. Among authors: gorodkin j. Gene. 2022 Oct 20;841:146756. doi: 10.1016/j.gene.2022.146756. Epub 2022 Jul 26. Gene. 2022. PMID: 35905857 Free article.
MicroRNA sequence motifs reveal asymmetry between the stem arms.
Gorodkin J, Havgaard JH, Ensterö M, Sawera M, Jensen P, Ohman M, Fredholm M. Gorodkin J, et al. Comput Biol Chem. 2006 Aug;30(4):249-54. doi: 10.1016/j.compbiolchem.2006.04.006. Epub 2006 Jun 22. Comput Biol Chem. 2006. PMID: 16798093
Multiple structural alignment and clustering of RNA sequences.
Torarinsson E, Havgaard JH, Gorodkin J. Torarinsson E, et al. Among authors: gorodkin j. Bioinformatics. 2007 Apr 15;23(8):926-32. doi: 10.1093/bioinformatics/btm049. Epub 2007 Feb 25. Bioinformatics. 2007. PMID: 17324941
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags.
Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Staefeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M. Gorodkin J, et al. Genome Biol. 2007;8(4):R45. doi: 10.1186/gb-2007-8-4-r45. Genome Biol. 2007. PMID: 17407547 Free PMC article.
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C. Panitz F, et al. Among authors: gorodkin j. Bioinformatics. 2007 Jul 1;23(13):i387-91. doi: 10.1093/bioinformatics/btm192. Bioinformatics. 2007. PMID: 17646321
Semiautomated improvement of RNA alignments.
Andersen ES, Lind-Thomsen A, Knudsen B, Kristensen SE, Havgaard JH, Torarinsson E, Larsen N, Zwieb C, Sestoft P, Kjems J, Gorodkin J. Andersen ES, et al. Among authors: gorodkin j. RNA. 2007 Nov;13(11):1850-9. doi: 10.1261/rna.215407. Epub 2007 Sep 5. RNA. 2007. PMID: 17804647 Free PMC article.
144 results