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Theta-curves in proteins.
Dabrowski-Tumanski P, Goundaroulis D, Stasiak A, Rawdon EJ, Sulkowska JI. Dabrowski-Tumanski P, et al. Among authors: goundaroulis d. Protein Sci. 2024 Sep;33(9):e5133. doi: 10.1002/pro.5133. Protein Sci. 2024. PMID: 39167036
Chromatin Is Frequently Unknotted at the Megabase Scale.
Goundaroulis D, Lieberman Aiden E, Stasiak A. Goundaroulis D, et al. Biophys J. 2020 May 5;118(9):2268-2279. doi: 10.1016/j.bpj.2019.11.002. Epub 2019 Nov 13. Biophys J. 2020. PMID: 31818464 Free PMC article.
Chromatin Loop Extrusion and Chromatin Unknotting.
Racko D, Benedetti F, Goundaroulis D, Stasiak A. Racko D, et al. Among authors: goundaroulis d. Polymers (Basel). 2018 Oct 11;10(10):1126. doi: 10.3390/polym10101126. Polymers (Basel). 2018. PMID: 30961051 Free PMC article.
KnotProt 2.0: a database of proteins with knots and other entangled structures.
Dabrowski-Tumanski P, Rubach P, Goundaroulis D, Dorier J, Sulkowski P, Millett KC, Rawdon EJ, Stasiak A, Sulkowska JI. Dabrowski-Tumanski P, et al. Among authors: goundaroulis d. Nucleic Acids Res. 2019 Jan 8;47(D1):D367-D375. doi: 10.1093/nar/gky1140. Nucleic Acids Res. 2019. PMID: 30508159 Free PMC article.