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Combinatorial microRNA target predictions.
Krek A, Grün D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, Rajewsky N. Krek A, et al. Nat Genet. 2005 May;37(5):495-500. doi: 10.1038/ng1536. Epub 2005 Apr 3. Nat Genet. 2005. PMID: 15806104
Gene expression of pluripotency determinants is conserved between mammalian and planarian stem cells.
Onal P, Grün D, Adamidi C, Rybak A, Solana J, Mastrobuoni G, Wang Y, Rahn HP, Chen W, Kempa S, Ziebold U, Rajewsky N. Onal P, et al. EMBO J. 2012 Jun 13;31(12):2755-69. doi: 10.1038/emboj.2012.110. Epub 2012 Apr 27. EMBO J. 2012. PMID: 22543868 Free PMC article.
Validation of noise models for single-cell transcriptomics.
Grün D, Kester L, van Oudenaarden A. Grün D, et al. Nat Methods. 2014 Jun;11(6):637-40. doi: 10.1038/nmeth.2930. Epub 2014 Apr 20. Nat Methods. 2014. PMID: 24747814
Single-cell messenger RNA sequencing reveals rare intestinal cell types.
Grün D, Lyubimova A, Kester L, Wiebrands K, Basak O, Sasaki N, Clevers H, van Oudenaarden A. Grün D, et al. Nature. 2015 Sep 10;525(7568):251-5. doi: 10.1038/nature14966. Epub 2015 Aug 19. Nature. 2015. PMID: 26287467
Design and Analysis of Single-Cell Sequencing Experiments.
Grün D, van Oudenaarden A. Grün D, et al. Cell. 2015 Nov 5;163(4):799-810. doi: 10.1016/j.cell.2015.10.039. Cell. 2015. PMID: 26544934 Review.
De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.
Grün D, Muraro MJ, Boisset JC, Wiebrands K, Lyubimova A, Dharmadhikari G, van den Born M, van Es J, Jansen E, Clevers H, de Koning EJP, van Oudenaarden A. Grün D, et al. Cell Stem Cell. 2016 Aug 4;19(2):266-277. doi: 10.1016/j.stem.2016.05.010. Epub 2016 Jun 23. Cell Stem Cell. 2016. PMID: 27345837 Free PMC article.
A Single-Cell Transcriptome Atlas of the Human Pancreas.
Muraro MJ, Dharmadhikari G, Grün D, Groen N, Dielen T, Jansen E, van Gurp L, Engelse MA, Carlotti F, de Koning EJ, van Oudenaarden A. Muraro MJ, et al. Cell Syst. 2016 Oct 26;3(4):385-394.e3. doi: 10.1016/j.cels.2016.09.002. Epub 2016 Sep 29. Cell Syst. 2016. PMID: 27693023 Free PMC article.
DNA Damage Signaling Instructs Polyploid Macrophage Fate in Granulomas.
Herrtwich L, Nanda I, Evangelou K, Nikolova T, Horn V, Sagar, Erny D, Stefanowski J, Rogell L, Klein C, Gharun K, Follo M, Seidl M, Kremer B, Münke N, Senges J, Fliegauf M, Aschman T, Pfeifer D, Sarrazin S, Sieweke MH, Wagner D, Dierks C, Haaf T, Ness T, Zaiss MM, Voll RE, Deshmukh SD, Prinz M, Goldmann T, Hölscher C, Hauser AE, Lopez-Contreras AJ, Grün D, Gorgoulis V, Diefenbach A, Henneke P, Triantafyllopoulou A. Herrtwich L, et al. Cell. 2016 Nov 17;167(5):1264-1280.e18. doi: 10.1016/j.cell.2016.09.054. Epub 2016 Oct 27. Cell. 2016. PMID: 28084216
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