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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, Elsik CG, Farmer A, Ficklin SP, Grant D, Grau E, Herndon N, Hu ZL, Humann J, Jaiswal P, Jonquet C, Laporte MA, Larmande P, Lazo G, McCarthy F, Menda N, Mungall CJ, Munoz-Torres MC, Naithani S, Nelson R, Nesdill D, Park C, Reecy J, Reiser L, Sanderson LA, Sen TZ, Staton M, Subramaniam S, Tello-Ruiz MK, Unda V, Unni D, Wang L, Ware D, Wegrzyn J, Williams J, Woodhouse M, Yu J, Main D. Harper L, et al. Database (Oxford). 2018 Jan 1;2018:bay088. doi: 10.1093/database/bay088. Database (Oxford). 2018. PMID: 30239679 Free PMC article.
Growing and cultivating the forest genomics database, TreeGenes.
Falk T, Herndon N, Grau E, Buehler S, Richter P, Zaman S, Baker EM, Ramnath R, Ficklin S, Staton M, Feltus FA, Jung S, Main D, Wegrzyn JL. Falk T, et al. Database (Oxford). 2018 Jan 1;2018:1-11. doi: 10.1093/database/bay084. Database (Oxford). 2018. PMID: 30239664 Free PMC article.
Growing and cultivating the forest genomics database, TreeGenes.
Falk T, Herndon N, Grau E, Buehler S, Richter P, Zaman S, Baker EM, Ramnath R, Ficklin S, Staton M, Feltus FA, Jung S, Main D, Wegrzyn JL. Falk T, et al. Database (Oxford). 2019 Jan 1;2019:baz043. doi: 10.1093/database/baz043. Database (Oxford). 2019. PMID: 30865259 Free PMC article. No abstract available.
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment.
Wegrzyn JL, Staton MA, Street NR, Main D, Grau E, Herndon N, Buehler S, Falk T, Zaman S, Ramnath R, Richter P, Sun L, Condon B, Almsaeed A, Chen M, Mannapperuma C, Jung S, Ficklin S. Wegrzyn JL, et al. Front Plant Sci. 2019 Jun 25;10:813. doi: 10.3389/fpls.2019.00813. eCollection 2019. Front Plant Sci. 2019. PMID: 31293610 Free PMC article.
Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases.
Staton M, Cannon E, Sanderson LA, Wegrzyn J, Anderson T, Buehler S, Cobo-Simón I, Faaberg K, Grau E, Guignon V, Gunoskey J, Inderski B, Jung S, Lager K, Main D, Poelchau M, Ramnath R, Richter P, West J, Ficklin S. Staton M, et al. Brief Bioinform. 2021 Nov 5;22(6):bbab238. doi: 10.1093/bib/bbab238. Brief Bioinform. 2021. PMID: 34251419 Free PMC article.