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Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.
Mol Ecol Resour. 2011 Mar;11(2):335-48. doi: 10.1111/j.1755-0998.2010.02936.x. Epub 2010 Nov 24.
Mol Ecol Resour. 2011.
PMID: 21429141
Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome.
Everett MV, Grau ED, Seeb JE.
Everett MV, et al. Among authors: grau ed.
Mol Ecol Resour. 2011 Mar;11 Suppl 1:93-108. doi: 10.1111/j.1755-0998.2010.02969.x.
Mol Ecol Resour. 2011.
PMID: 21429166
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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, Elsik CG, Farmer A, Ficklin SP, Grant D, Grau E, Herndon N, Hu ZL, Humann J, Jaiswal P, Jonquet C, Laporte MA, Larmande P, Lazo G, McCarthy F, Menda N, Mungall CJ, Munoz-Torres MC, Naithani S, Nelson R, Nesdill D, Park C, Reecy J, Reiser L, Sanderson LA, Sen TZ, Staton M, Subramaniam S, Tello-Ruiz MK, Unda V, Unni D, Wang L, Ware D, Wegrzyn J, Williams J, Woodhouse M, Yu J, Main D.
Harper L, et al.
Database (Oxford). 2018 Jan 1;2018:bay088. doi: 10.1093/database/bay088.
Database (Oxford). 2018.
PMID: 30239679
Free PMC article.
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Growing and cultivating the forest genomics database, TreeGenes.
Falk T, Herndon N, Grau E, Buehler S, Richter P, Zaman S, Baker EM, Ramnath R, Ficklin S, Staton M, Feltus FA, Jung S, Main D, Wegrzyn JL.
Falk T, et al.
Database (Oxford). 2018 Jan 1;2018:1-11. doi: 10.1093/database/bay084.
Database (Oxford). 2018.
PMID: 30239664
Free PMC article.
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Growing and cultivating the forest genomics database, TreeGenes.
Falk T, Herndon N, Grau E, Buehler S, Richter P, Zaman S, Baker EM, Ramnath R, Ficklin S, Staton M, Feltus FA, Jung S, Main D, Wegrzyn JL.
Falk T, et al.
Database (Oxford). 2019 Jan 1;2019:baz043. doi: 10.1093/database/baz043.
Database (Oxford). 2019.
PMID: 30865259
Free PMC article.
No abstract available.
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Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment.
Wegrzyn JL, Staton MA, Street NR, Main D, Grau E, Herndon N, Buehler S, Falk T, Zaman S, Ramnath R, Richter P, Sun L, Condon B, Almsaeed A, Chen M, Mannapperuma C, Jung S, Ficklin S.
Wegrzyn JL, et al.
Front Plant Sci. 2019 Jun 25;10:813. doi: 10.3389/fpls.2019.00813. eCollection 2019.
Front Plant Sci. 2019.
PMID: 31293610
Free PMC article.
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Cyberinfrastructure and resources to enable an integrative approach to studying forest trees.
Wegrzyn JL, Falk T, Grau E, Buehler S, Ramnath R, Herndon N.
Wegrzyn JL, et al.
Evol Appl. 2019 Nov 3;13(1):228-241. doi: 10.1111/eva.12860. eCollection 2020 Jan.
Evol Appl. 2019.
PMID: 31892954
Free PMC article.
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Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases.
Staton M, Cannon E, Sanderson LA, Wegrzyn J, Anderson T, Buehler S, Cobo-Simón I, Faaberg K, Grau E, Guignon V, Gunoskey J, Inderski B, Jung S, Lager K, Main D, Poelchau M, Ramnath R, Richter P, West J, Ficklin S.
Staton M, et al.
Brief Bioinform. 2021 Nov 5;22(6):bbab238. doi: 10.1093/bib/bbab238.
Brief Bioinform. 2021.
PMID: 34251419
Free PMC article.
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