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A unified model for yeast transcript definition.
de Boer CG, van Bakel H, Tsui K, Li J, Morris QD, Nislow C, Greenblatt JF, Hughes TR. de Boer CG, et al. Among authors: greenblatt jf. Genome Res. 2014 Jan;24(1):154-66. doi: 10.1101/gr.164327.113. Epub 2013 Oct 29. Genome Res. 2014. PMID: 24170600 Free PMC article.
Multiparameter functional diversity of human C2H2 zinc finger proteins.
Schmitges FW, Radovani E, Najafabadi HS, Barazandeh M, Campitelli LF, Yin Y, Jolma A, Zhong G, Guo H, Kanagalingam T, Dai WF, Taipale J, Emili A, Greenblatt JF, Hughes TR. Schmitges FW, et al. Among authors: greenblatt jf. Genome Res. 2016 Dec;26(12):1742-1752. doi: 10.1101/gr.209643.116. Epub 2016 Nov 16. Genome Res. 2016. PMID: 27852650 Free PMC article.
The functional landscape of mouse gene expression.
Zhang W, Morris QD, Chang R, Shai O, Bakowski MA, Mitsakakis N, Mohammad N, Robinson MD, Zirngibl R, Somogyi E, Laurin N, Eftekharpour E, Sat E, Grigull J, Pan Q, Peng WT, Krogan N, Greenblatt J, Fehlings M, van der Kooy D, Aubin J, Bruneau BG, Rossant J, Blencowe BJ, Frey BJ, Hughes TR. Zhang W, et al. J Biol. 2004;3(5):21. doi: 10.1186/jbiol16. Epub 2004 Dec 6. J Biol. 2004. PMID: 15588312 Free PMC article.
Perspectives on ENCODE.
ENCODE Project Consortium; Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, Cherry JM, Bernstein BE, Mendenhall EM, Zerbino DR, Frankish A, Flicek P, Myers RM. ENCODE Project Consortium, et al. Nature. 2020 Jul;583(7818):693-698. doi: 10.1038/s41586-020-2449-8. Epub 2020 Jul 29. Nature. 2020. PMID: 32728248 Free PMC article.
C2H2 zinc finger proteins greatly expand the human regulatory lexicon.
Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM, Greenblatt J, Frey BJ, Hughes TR. Najafabadi HS, et al. Nat Biotechnol. 2015 May;33(5):555-62. doi: 10.1038/nbt.3128. Epub 2015 Feb 18. Nat Biotechnol. 2015. PMID: 25690854
Regulation of alternative polyadenylation by the C2H2-zinc-finger protein Sp1.
Song J, Nabeel-Shah S, Pu S, Lee H, Braunschweig U, Ni Z, Ahmed N, Marcon E, Zhong G, Ray D, Ha KCH, Guo X, Zhang Z, Hughes TR, Blencowe BJ, Greenblatt JF. Song J, et al. Among authors: greenblatt jf. Mol Cell. 2022 Sep 1;82(17):3135-3150.e9. doi: 10.1016/j.molcel.2022.06.031. Epub 2022 Jul 31. Mol Cell. 2022. PMID: 35914531 Free article.
256 results