Greene D - Search Results

1

Improved functional overview of protein complexes using inferred epistatic relationships.

Ryan C, Greene D, Guénolé A, van Attikum H, Krogan NJ, Cunningham P, Cagney G. Ryan C, et al. Among authors: greene d. BMC Syst Biol. 2011 May 23;5:80. doi: 10.1186/1752-0509-5-80. BMC Syst Biol. 2011. PMID: 21605386 Free PMC article.

2

Ensemble non-negative matrix factorization methods for clustering protein-protein interactions.

Greene D, Cagney G, Krogan N, Cunningham P. Greene D, et al. Bioinformatics. 2008 Aug 1;24(15):1722-8. doi: 10.1093/bioinformatics/btn286. Epub 2008 Jun 12. Bioinformatics. 2008. PMID: 18556670 Free PMC article.

3

Missing value imputation for epistatic MAPs.

Ryan C, Greene D, Cagney G, Cunningham P. Ryan C, et al. Among authors: greene d. BMC Bioinformatics. 2010 Apr 20;11:197. doi: 10.1186/1471-2105-11-197. BMC Bioinformatics. 2010. PMID: 20406472 Free PMC article.

4

Imputing and predicting quantitative genetic interactions in epistatic MAPs.

Ryan C, Cagney G, Krogan N, Cunningham P, Greene D. Ryan C, et al. Among authors: greene d. Methods Mol Biol. 2011;781:353-61. doi: 10.1007/978-1-61779-276-2_17. Methods Mol Biol. 2011. PMID: 21877290 Free PMC article.

5

Hierarchical modularity and the evolution of genetic interactomes across species.

Ryan CJ, Roguev A, Patrick K, Xu J, Jahari H, Tong Z, Beltrao P, Shales M, Qu H, Collins SR, Kliegman JI, Jiang L, Kuo D, Tosti E, Kim HS, Edelmann W, Keogh MC, Greene D, Tang C, Cunningham P, Shokat KM, Cagney G, Svensson JP, Guthrie C, Espenshade PJ, Ideker T, Krogan NJ. Ryan CJ, et al. Among authors: greene d. Mol Cell. 2012 Jun 8;46(5):691-704. doi: 10.1016/j.molcel.2012.05.028. Mol Cell. 2012. PMID: 22681890 Free PMC article.

6

Genome-wide epistatic expression quantitative trait loci discovery in four human tissues reveals the importance of local chromosomal interactions governing gene expression.

Fitzpatrick DJ, Ryan CJ, Shah N, Greene D, Molony C, Shields DC. Fitzpatrick DJ, et al. Among authors: greene d. BMC Genomics. 2015 Feb 21;16(1):109. doi: 10.1186/s12864-015-1300-3. BMC Genomics. 2015. PMID: 25765234 Free PMC article.

7

Towards explainable community finding.

Sadler S, Greene D, Archambault D. Sadler S, et al. Among authors: greene d. Appl Netw Sci. 2022;7(1):81. doi: 10.1007/s41109-022-00515-6. Epub 2022 Dec 8. Appl Netw Sci. 2022. PMID: 36510602 Free PMC article.

8

Overlapping community finding with noisy pairwise constraints.

Alghamdi E, Rushe E, Mac Namee B, Greene D. Alghamdi E, et al. Among authors: greene d. Appl Netw Sci. 2020;5(1):98. doi: 10.1007/s41109-020-00340-9. Epub 2020 Dec 11. Appl Netw Sci. 2020. PMID: 33344759 Free PMC article.

9

Bone segmentation in contrast enhanced whole-body computed tomography.

Leydon P, O'Connell M, Greene D, Curran KM. Leydon P, et al. Among authors: greene d. Biomed Phys Eng Express. 2022 Jul 13;8(5). doi: 10.1088/2057-1976/ac37ab. Biomed Phys Eng Express. 2022. PMID: 34749353

10

Spectroscopic technologies and data fusion: Applications for the dairy industry.

Hayes E, Greene D, O'Donnell C, O'Shea N, Fenelon MA. Hayes E, et al. Among authors: greene d. Front Nutr. 2023 Jan 11;9:1074688. doi: 10.3389/fnut.2022.1074688. eCollection 2022. Front Nutr. 2023. PMID: 36712542 Free PMC article.

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