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Genome trees and the tree of life.
Wolf YI, Rogozin IB, Grishin NV, Koonin EV. Wolf YI, et al. Among authors: grishin nv. Trends Genet. 2002 Sep;18(9):472-9. doi: 10.1016/s0168-9525(02)02744-0. Trends Genet. 2002. PMID: 12175808 Review.
CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems.
Makarova KS, Anantharaman V, Grishin NV, Koonin EV, Aravind L. Makarova KS, et al. Among authors: grishin nv. Front Genet. 2014 Apr 30;5:102. doi: 10.3389/fgene.2014.00102. eCollection 2014. Front Genet. 2014. PMID: 24817877 Free PMC article.
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action.
Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV. Makarova KS, et al. Among authors: grishin nv. Biol Direct. 2006 Mar 16;1:7. doi: 10.1186/1745-6150-1-7. Biol Direct. 2006. PMID: 16545108 Free PMC article.
A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV. Makarova KS, et al. Among authors: grishin nv. Nucleic Acids Res. 2002 Jan 15;30(2):482-96. doi: 10.1093/nar/30.2.482. Nucleic Acids Res. 2002. PMID: 11788711 Free PMC article.
Estimating the number of protein folds and families from complete genome data.
Wolf YI, Grishin NV, Koonin EV. Wolf YI, et al. Among authors: grishin nv. J Mol Biol. 2000 Jun 16;299(4):897-905. doi: 10.1006/jmbi.2000.3786. J Mol Biol. 2000. PMID: 10843846
The bacterial replicative helicase DnaB evolved from a RecA duplication.
Leipe DD, Aravind L, Grishin NV, Koonin EV. Leipe DD, et al. Among authors: grishin nv. Genome Res. 2000 Jan;10(1):5-16. Genome Res. 2000. PMID: 10645945
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.
Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV. Makarova KS, et al. Among authors: grishin nv. Genome Res. 1999 Jul;9(7):608-28. Genome Res. 1999. PMID: 10413400
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