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Emerging challenges in the design of selective substrates, inhibitors and activity-based probes for indistinguishable proteases.
Kasperkiewicz P, Poreba M, Groborz K, Drag M. Kasperkiewicz P, et al. Among authors: groborz k. FEBS J. 2017 May;284(10):1518-1539. doi: 10.1111/febs.14001. Epub 2017 Jan 29. FEBS J. 2017. PMID: 28052575 Free PMC article. Review.
Extensive peptide and natural protein substrate screens reveal that mouse caspase-11 has much narrower substrate specificity than caspase-1.
Ramirez MLG, Poreba M, Snipas SJ, Groborz K, Drag M, Salvesen GS. Ramirez MLG, et al. Among authors: groborz k. J Biol Chem. 2018 May 4;293(18):7058-7067. doi: 10.1074/jbc.RA117.001329. Epub 2018 Feb 6. J Biol Chem. 2018. PMID: 29414788 Free PMC article.
Selective imaging of cathepsin L in breast cancer by fluorescent activity-based probes.
Poreba M, Rut W, Vizovisek M, Groborz K, Kasperkiewicz P, Finlay D, Vuori K, Turk D, Turk B, Salvesen GS, Drag M. Poreba M, et al. Among authors: groborz k. Chem Sci. 2018 Jan 16;9(8):2113-2129. doi: 10.1039/c7sc04303a. eCollection 2018 Feb 28. Chem Sci. 2018. PMID: 29719685 Free PMC article.
Caspase selective reagents for diagnosing apoptotic mechanisms.
Poreba M, Groborz K, Navarro M, Snipas SJ, Drag M, Salvesen GS. Poreba M, et al. Among authors: groborz k. Cell Death Differ. 2019 Feb;26(2):229-244. doi: 10.1038/s41418-018-0110-y. Epub 2018 May 10. Cell Death Differ. 2019. PMID: 29748600 Free PMC article.
Determination of extended substrate specificity of the MALT1 as a strategy for the design of potent substrates and activity-based probes.
Kasperkiewicz P, Kołt S, Janiszewski T, Groborz K, Poręba M, Snipas SJ, Salvesen GS, Drąg M. Kasperkiewicz P, et al. Among authors: groborz k. Sci Rep. 2018 Oct 30;8(1):15998. doi: 10.1038/s41598-018-34476-7. Sci Rep. 2018. PMID: 30375474 Free PMC article.
Characterization of P. falciparum dipeptidyl aminopeptidase 3 specificity identifies differences in amino acid preferences between peptide-based substrates and covalent inhibitors.
de Vries LE, Sanchez MI, Groborz K, Kuppens L, Poreba M, Lehmann C, Nevins N, Withers-Martinez C, Hirst DJ, Yuan F, Arastu-Kapur S, Horn M, Mares M, Bogyo M, Drag M, Deu E. de Vries LE, et al. Among authors: groborz k. FEBS J. 2019 Oct;286(20):3998-4023. doi: 10.1111/febs.14953. Epub 2019 Jun 24. FEBS J. 2019. PMID: 31177613 Free PMC article.
Fluorescent probes towards selective cathepsin B detection and visualization in cancer cells and patient samples.
Poreba M, Groborz K, Vizovisek M, Maruggi M, Turk D, Turk B, Powis G, Drag M, Salvesen GS. Poreba M, et al. Among authors: groborz k. Chem Sci. 2019 Jul 31;10(36):8461-8477. doi: 10.1039/c9sc00997c. eCollection 2019 Sep 28. Chem Sci. 2019. PMID: 31803426 Free PMC article.
Profiling of flaviviral NS2B-NS3 protease specificity provides a structural basis for the development of selective chemical tools that differentiate Dengue from Zika and West Nile viruses.
Rut W, Groborz K, Zhang L, Modrzycka S, Poreba M, Hilgenfeld R, Drag M. Rut W, et al. Among authors: groborz k. Antiviral Res. 2020 Mar;175:104731. doi: 10.1016/j.antiviral.2020.104731. Epub 2020 Jan 31. Antiviral Res. 2020. PMID: 32014497
Design of Optical-Imaging Probes by Screening of Diverse Substrate Libraries Directly in Disease-Tissue Extracts.
Tholen M, Yim JJ, Groborz K, Yoo E, Martin BA, van den Berg NS, Drag M, Bogyo M. Tholen M, et al. Among authors: groborz k. Angew Chem Int Ed Engl. 2020 Jun 26. doi: 10.1002/anie.202006719. Online ahead of print. Angew Chem Int Ed Engl. 2020. PMID: 32589815
Multiplexed Probing of Proteolytic Enzymes Using Mass Cytometry-Compatible Activity-Based Probes.
Poreba M, Groborz KM, Rut W, Pore M, Snipas SJ, Vizovisek M, Turk B, Kuhn P, Drag M, Salvesen GS. Poreba M, et al. Among authors: groborz km. J Am Chem Soc. 2020 Sep 30;142(39):16704-16715. doi: 10.1021/jacs.0c06762. Epub 2020 Sep 15. J Am Chem Soc. 2020. PMID: 32870676
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