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ASAView: database and tool for solvent accessibility representation in proteins.
Ahmad S, Gromiha M, Fawareh H, Sarai A. Ahmad S, et al. BMC Bioinformatics. 2004 May 1;5:51. doi: 10.1186/1471-2105-5-51. BMC Bioinformatics. 2004. PMID: 15119964 Free PMC article.
GAP: towards almost 100 percent prediction for β-strand-mediated aggregating peptides with distinct morphologies.
Thangakani AM, Kumar S, Nagarajan R, Velmurugan D, Gromiha MM. Thangakani AM, et al. Bioinformatics. 2014 Jul 15;30(14):1983-90. doi: 10.1093/bioinformatics/btu167. Epub 2014 Mar 28. Bioinformatics. 2014. PMID: 24681906
Bioinformatics approaches for functional annotation of membrane proteins.
Gromiha MM, Ou YY. Gromiha MM, et al. Brief Bioinform. 2014 Mar;15(2):155-68. doi: 10.1093/bib/bbt015. Epub 2013 Mar 23. Brief Bioinform. 2014. PMID: 23524979 Review.
Protein-protein binding affinity prediction from amino acid sequence.
Yugandhar K, Gromiha MM. Yugandhar K, et al. Bioinformatics. 2014 Dec 15;30(24):3583-9. doi: 10.1093/bioinformatics/btu580. Epub 2014 Aug 28. Bioinformatics. 2014. PMID: 25172924
PDBparam: Online Resource for Computing Structural Parameters of Proteins.
Nagarajan R, Archana A, Thangakani AM, Jemimah S, Velmurugan D, Gromiha MM. Nagarajan R, et al. Bioinform Biol Insights. 2016 Jun 14;10:73-80. doi: 10.4137/BBI.S38423. eCollection 2016. Bioinform Biol Insights. 2016. PMID: 27330281 Free PMC article. Review.
Distinct position-specific sequence features of hexa-peptides that form amyloid-fibrils: application to discriminate between amyloid fibril and amorphous β-aggregate forming peptide sequences.
Thangakani AM, Kumar S, Velmurugan D, Gromiha MM. Thangakani AM, et al. BMC Bioinformatics. 2013;14 Suppl 8(Suppl 8):S6. doi: 10.1186/1471-2105-14-S8-S6. Epub 2013 May 9. BMC Bioinformatics. 2013. PMID: 23815227 Free PMC article.
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