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A proposed syntax for Minimotif Semantics, version 1.
Vyas J, Nowling RJ, Maciejewski MW, Rajasekaran S, Gryk MR, Schiller MR. Vyas J, et al. Among authors: gryk mr. BMC Genomics. 2009 Aug 5;10:360. doi: 10.1186/1471-2164-10-360. BMC Genomics. 2009. PMID: 19656396 Free PMC article.
High-performance exact algorithms for motif search.
Rajasekaran S, Balla S, Huang CH, Thapar V, Gryk M, Maciejewski M, Schiller M. Rajasekaran S, et al. J Clin Monit Comput. 2005 Oct;19(4-5):319-28. doi: 10.1007/s10877-005-0677-y. J Clin Monit Comput. 2005. PMID: 16328946
Achieving high accuracy prediction of minimotifs.
Mi T, Rajasekaran S, Merlin JC, Gryk M, Schiller MR. Mi T, et al. Among authors: gryk m. PLoS One. 2012;7(9):e45589. doi: 10.1371/journal.pone.0045589. Epub 2012 Sep 27. PLoS One. 2012. PMID: 23029121 Free PMC article.
Minimotif Miner: a tool for investigating protein function.
Balla S, Thapar V, Verma S, Luong T, Faghri T, Huang CH, Rajasekaran S, del Campo JJ, Shinn JH, Mohler WA, Maciejewski MW, Gryk MR, Piccirillo B, Schiller SR, Schiller MR. Balla S, et al. Among authors: gryk mr. Nat Methods. 2006 Mar;3(3):175-7. doi: 10.1038/nmeth856. Nat Methods. 2006. PMID: 16489333
MimoSA: a system for minimotif annotation.
Vyas J, Nowling RJ, Meusburger T, Sargeant D, Kadaveru K, Gryk MR, Kundeti V, Rajasekaran S, Schiller MR. Vyas J, et al. Among authors: gryk mr. BMC Bioinformatics. 2010 Jun 16;11:328. doi: 10.1186/1471-2105-11-328. BMC Bioinformatics. 2010. PMID: 20565705 Free PMC article.
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences.
Mi T, Merlin JC, Deverasetty S, Gryk MR, Bill TJ, Brooks AW, Lee LY, Rathnayake V, Ross CA, Sargeant DP, Strong CL, Watts P, Rajasekaran S, Schiller MR. Mi T, et al. Among authors: gryk mr. Nucleic Acids Res. 2012 Jan;40(Database issue):D252-60. doi: 10.1093/nar/gkr1189. Epub 2011 Dec 6. Nucleic Acids Res. 2012. PMID: 22146221 Free PMC article.
Minimotif miner 2nd release: a database and web system for motif search.
Rajasekaran S, Balla S, Gradie P, Gryk MR, Kadaveru K, Kundeti V, Maciejewski MW, Mi T, Rubino N, Vyas J, Schiller MR. Rajasekaran S, et al. Among authors: gryk mr. Nucleic Acids Res. 2009 Jan;37(Database issue):D185-90. doi: 10.1093/nar/gkn865. Epub 2008 Oct 31. Nucleic Acids Res. 2009. PMID: 18978024 Free PMC article.
Secondary structure, a missing component of sequence-based minimotif definitions.
Sargeant DP, Gryk MR, Maciejewski MW, Thapar V, Kundeti V, Rajasekaran S, Romero P, Dunker K, Li SC, Kaneko T, Schiller MR. Sargeant DP, et al. Among authors: gryk mr. PLoS One. 2012;7(12):e49957. doi: 10.1371/journal.pone.0049957. Epub 2012 Dec 7. PLoS One. 2012. PMID: 23236358 Free PMC article.
44 results