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23,586 results
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Advanced heat map and clustering analysis using heatmap3.
Zhao S, Guo Y, Sheng Q, Shyr Y. Zhao S, et al. Among authors: guo y. Biomed Res Int. 2014;2014:986048. doi: 10.1155/2014/986048. Epub 2014 Jul 16. Biomed Res Int. 2014. PMID: 25143956 Free PMC article.
The use of next generation sequencing technology to study the effect of radiation therapy on mitochondrial DNA mutation.
Guo Y, Cai Q, Samuels DC, Ye F, Long J, Li CI, Winther JF, Tawn EJ, Stovall M, Lähteenmäki P, Malila N, Levy S, Shaffer C, Shyr Y, Shu XO, Boice JD Jr. Guo Y, et al. Mutat Res. 2012 May 15;744(2):154-60. doi: 10.1016/j.mrgentox.2012.02.006. Epub 2012 Feb 24. Mutat Res. 2012. PMID: 22387842 Free PMC article.
Exome sequencing generates high quality data in non-target regions.
Guo Y, Long J, He J, Li CI, Cai Q, Shu XO, Zheng W, Li C. Guo Y, et al. BMC Genomics. 2012 May 20;13:194. doi: 10.1186/1471-2164-13-194. BMC Genomics. 2012. PMID: 22607156 Free PMC article.
The effect of strand bias in Illumina short-read sequencing data.
Guo Y, Li J, Li CI, Long J, Samuels DC, Shyr Y. Guo Y, et al. BMC Genomics. 2012 Nov 24;13:666. doi: 10.1186/1471-2164-13-666. BMC Genomics. 2012. PMID: 23176052 Free PMC article.
Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data.
Liu Q, Guo Y, Li J, Long J, Zhang B, Shyr Y. Liu Q, et al. Among authors: guo y. BMC Genomics. 2012;13 Suppl 8(Suppl 8):S8. doi: 10.1186/1471-2164-13-S8-S8. Epub 2012 Dec 17. BMC Genomics. 2012. PMID: 23281772 Free PMC article.
MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis.
Guo Y, Li J, Li CI, Shyr Y, Samuels DC. Guo Y, et al. Bioinformatics. 2013 May 1;29(9):1210-1. doi: 10.1093/bioinformatics/btt118. Epub 2013 Mar 6. Bioinformatics. 2013. PMID: 23471301 Free PMC article.
Evaluation of allele frequency estimation using pooled sequencing data simulation.
Guo Y, Samuels DC, Li J, Clark T, Li CI, Shyr Y. Guo Y, et al. ScientificWorldJournal. 2013;2013:895496. doi: 10.1155/2013/895496. Epub 2013 Feb 7. ScientificWorldJournal. 2013. PMID: 23476151 Free PMC article.
Finding the lost treasures in exome sequencing data.
Samuels DC, Han L, Li J, Quanghu S, Clark TA, Shyr Y, Guo Y. Samuels DC, et al. Among authors: guo y. Trends Genet. 2013 Oct;29(10):593-9. doi: 10.1016/j.tig.2013.07.006. Epub 2013 Aug 22. Trends Genet. 2013. PMID: 23972387 Free PMC article. Review.
Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data.
Guo Y, Sheng Q, Li J, Ye F, Samuels DC, Shyr Y. Guo Y, et al. PLoS One. 2013 Aug 20;8(8):e71462. doi: 10.1371/journal.pone.0071462. eCollection 2013. PLoS One. 2013. PMID: 23977046 Free PMC article.
Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as control.
Guo Y, Sheng Q, Samuels DC, Lehmann B, Bauer JA, Pietenpol J, Shyr Y. Guo Y, et al. Biomed Res Int. 2013;2013:915636. doi: 10.1155/2013/915636. Epub 2013 Nov 4. Biomed Res Int. 2013. PMID: 24303503 Free PMC article.
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