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179 results
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Detecting protein candidate fragments using a structural alphabet profile comparison approach.
Shen Y, Picord G, Guyon F, Tuffery P. Shen Y, et al. Among authors: guyon f. PLoS One. 2013 Nov 26;8(11):e80493. doi: 10.1371/journal.pone.0080493. eCollection 2013. PLoS One. 2013. PMID: 24303019 Free PMC article.
DaReUS-Loop: accurate loop modeling using fragments from remote or unrelated proteins.
Karami Y, Guyon F, De Vries S, Tufféry P. Karami Y, et al. Among authors: guyon f. Sci Rep. 2018 Sep 12;8(1):13673. doi: 10.1038/s41598-018-32079-w. Sci Rep. 2018. PMID: 30209260 Free PMC article.
PatchSearch: a web server for off-target protein identification.
Rey J, Rasolohery I, Tufféry P, Guyon F, Moroy G. Rey J, et al. Among authors: guyon f. Nucleic Acids Res. 2019 Jul 2;47(W1):W365-W372. doi: 10.1093/nar/gkz478. Nucleic Acids Res. 2019. PMID: 31131411 Free PMC article.
BCSearch: fast structural fragment mining over large collections of protein structures.
Guyon F, Martz F, Vavrusa M, Bécot J, Rey J, Tufféry P. Guyon F, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W378-82. doi: 10.1093/nar/gkv492. Epub 2015 May 14. Nucleic Acids Res. 2015. PMID: 25977292 Free PMC article.
Fast protein fragment similarity scoring using a Binet-Cauchy kernel.
Guyon F, Tufféry P. Guyon F, et al. Bioinformatics. 2014 Mar 15;30(6):784-91. doi: 10.1093/bioinformatics/btt618. Epub 2013 Oct 27. Bioinformatics. 2014. PMID: 24167157
SA-Search: a web tool for protein structure mining based on a Structural Alphabet.
Guyon F, Camproux AC, Hochez J, Tufféry P. Guyon F, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W545-8. doi: 10.1093/nar/gkh467. Nucleic Acids Res. 2004. PMID: 15215446 Free PMC article.
Improved greedy algorithm for protein structure reconstruction.
Tuffery P, Guyon F, Derreumaux P. Tuffery P, et al. Among authors: guyon f. J Comput Chem. 2005 Apr 15;26(5):506-13. doi: 10.1002/jcc.20181. J Comput Chem. 2005. PMID: 15693017
PatchSearch: A Fast Computational Method for Off-Target Detection.
Rasolohery I, Moroy G, Guyon F. Rasolohery I, et al. Among authors: guyon f. J Chem Inf Model. 2017 Apr 24;57(4):769-777. doi: 10.1021/acs.jcim.6b00529. Epub 2017 Mar 24. J Chem Inf Model. 2017. PMID: 28282119
Frog2: Efficient 3D conformation ensemble generator for small compounds.
Miteva MA, Guyon F, Tufféry P. Miteva MA, et al. Among authors: guyon f. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W622-7. doi: 10.1093/nar/gkq325. Epub 2010 May 5. Nucleic Acids Res. 2010. PMID: 20444874 Free PMC article.
PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.
Thévenet P, Shen Y, Maupetit J, Guyon F, Derreumaux P, Tufféry P. Thévenet P, et al. Among authors: guyon f. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W288-93. doi: 10.1093/nar/gks419. Epub 2012 May 11. Nucleic Acids Res. 2012. PMID: 22581768 Free PMC article.
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