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The map of the cell is in the chromosome.
Danchin A, Hénaut A. Danchin A, et al. Among authors: henaut a. Curr Opin Genet Dev. 1997 Dec;7(6):852-4. doi: 10.1016/s0959-437x(97)80051-2. Curr Opin Genet Dev. 1997. PMID: 9468798 No abstract available.
Codon usage is imposed by the gene location in the transcription unit.
Delorme MO, Hénaut A. Delorme MO, et al. Among authors: henaut a. Curr Genet. 1991 Nov;20(5):353-8. doi: 10.1007/BF00317061. Curr Genet. 1991. PMID: 1807825
A characteristic profile of the fluctuations of codon usage is observed in bacteriophages and mitochondria. By following the DNA in the direction of transcription, one moves slowly from a region where selective pressure favours codons ending with C to a regio
A characteristic profile of the fluctuations of codon usage is observed in bacteriophages and mitochondria. By following the DNA in t
Using codon usage to predict genes origin: is the Escherichia coli outer membrane a patchwork of products from different genomes?
Guerdoux-Jamet P, Hénaut A, Nitschké P, Risler JL, Danchin A. Guerdoux-Jamet P, et al. Among authors: henaut a. DNA Res. 1997 Aug 31;4(4):257-65. doi: 10.1093/dnares/4.4.257. DNA Res. 1997. PMID: 9405933
The analysis predicts that the outer membrane might originate from a genome other than the genome coding for the major part of the cell. Such a special origin would explain in structural terms, the likely lethality of porins if they were inadvertently inserted withi …
The analysis predicts that the outer membrane might originate from a genome other than the genome coding for the major part of the ce …
Uneven distribution of GATC motifs in the Escherichia coli chromosome, its plasmids and its phages.
Hénaut A, Rouxel T, Gleizes A, Moszer I, Danchin A. Hénaut A, et al. J Mol Biol. 1996 Apr 5;257(3):574-85. doi: 10.1006/jmbi.1996.0186. J Mol Biol. 1996. PMID: 8648625
But when a realistic model of the chromosome (made of average genes having the same codon usage as in the real chromasome), is used as a theoretical reference, strong biasesare observed. ...In this process the methylation status of GATC clusters would be very import …
But when a realistic model of the chromosome (made of average genes having the same codon usage as in the real chromasome), is used a …
METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database.
Rouxel T, Danchin A, Henaut A. Rouxel T, et al. Among authors: henaut a. Comput Appl Biosci. 1993 Jun;9(3):315-24. doi: 10.1093/bioinformatics/9.3.315. Comput Appl Biosci. 1993. PMID: 8324631
Data on genes make it possible to establish a link with existing computer structures specialized for genomic sequences. The present structure of the database presented here consists of three environments. ...This database can thus be substituted for the Boehringer table as …
Data on genes make it possible to establish a link with existing computer structures specialized for genomic sequences. The present s …
Colibri: a functional data base for the Escherichia coli genome.
Médigue C, Viari A, Hénaut A, Danchin A. Médigue C, et al. Among authors: henaut a. Microbiol Rev. 1993 Sep;57(3):623-54. Microbiol Rev. 1993. PMID: 8246843 Free PMC article. Review.
A data base, implemented on Macintosh by using the data base management system 4th Dimension, is described. It is constructed around a core constituted by known contigs of E. coli sequences and links data collected in general libraries (unmodified) to data associate
A data base, implemented on Macintosh by using the data base management system 4th Dimension, is described. It is constructed around
Escherichia coli molecular genetic map (1000 kbp): update I.
Médigue C, Hénaut A, Danchin A. Médigue C, et al. Among authors: henaut a. Mol Microbiol. 1990 Sep;4(9):1443-54. Mol Microbiol. 1990. PMID: 2287271
A significant number of sites were missing from the original map, mainly involving two of the eight enzymes used by Kohara et al. (1987), ie. ...
A significant number of sites were missing from the original map, mainly involving two of the eight enzymes used by Kohara et al. (19
Mapping of sequenced genes (700 kbp) in the restriction map of the Escherichia coli chromosome.
Médigue C, Bouché JP, Hénaut A, Danchin A. Médigue C, et al. Among authors: henaut a. Mol Microbiol. 1990 Feb;4(2):169-87. doi: 10.1111/j.1365-2958.1990.tb00585.x. Mol Microbiol. 1990. PMID: 2187142
The program identifies the segment's map position using a restriction pattern analysis obtained with all, or some, of the eight enzymes used by Kohara et al. (1987). ...Analysis of the data indicates that there is only a very low level of polymorphism, at the nucleo …
The program identifies the segment's map position using a restriction pattern analysis obtained with all, or some, of the eight enzym …
From data banks to data bases.
Danchin A, Médigue C, Gascuel O, Soldano H, Hénaut A. Danchin A, et al. Among authors: henaut a. Res Microbiol. 1991 Sep-Oct;142(7-8):913-6. doi: 10.1016/0923-2508(91)90073-j. Res Microbiol. 1991. PMID: 1784830 Review.
Therefore we evaluated the feasibility of constructing a data base for Escherichia coli using the data present in the banks. ...
Therefore we evaluated the feasibility of constructing a data base for Escherichia coli using the data present in the banks. ...
Evidence for horizontal gene transfer in Escherichia coli speciation.
Médigue C, Rouxel T, Vigier P, Hénaut A, Danchin A. Médigue C, et al. Among authors: henaut a. J Mol Biol. 1991 Dec 20;222(4):851-6. doi: 10.1016/0022-2836(91)90575-q. J Mol Biol. 1991. PMID: 1762151
The first two classes, as known, encompass genes expressed either continuously at a high level, or at a low level and/or rarely; the third class consists of genes corresponding to surface elements of the cell, genes coming from mobile elements as well as genes resul …
The first two classes, as known, encompass genes expressed either continuously at a high level, or at a low level and/or rarel …
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