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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1997 1
1998 2
1999 3
2000 3
2001 1
2002 3
2003 2
2004 1
2005 1
2006 1
2007 1
2009 1
2010 1
2011 1
2020 0
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22 results
Results by year
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Page 1
Profile hidden Markov models.
Eddy SR. Eddy SR. Bioinformatics. 1998;14(9):755-63. doi: 10.1093/bioinformatics/14.9.755. Bioinformatics. 1998. PMID: 9918945 Review.
Noncoding RNA genes.
Eddy SR. Eddy SR. Curr Opin Genet Dev. 1999 Dec;9(6):695-9. doi: 10.1016/s0959-437x(99)00022-2. Curr Opin Genet Dev. 1999. PMID: 10607607 Review.
Infernal 1.0: inference of RNA alignments.
Nawrocki EP, Kolbe DL, Eddy SR. Nawrocki EP, et al. Bioinformatics. 2009 May 15;25(10):1335-7. doi: 10.1093/bioinformatics/btp157. Epub 2009 Mar 23. Bioinformatics. 2009. PMID: 19307242 Free PMC article.
RSEARCH: finding homologs of single structured RNA sequences.
Klein RJ, Eddy SR. Klein RJ, et al. BMC Bioinformatics. 2003 Sep 22;4:44. doi: 10.1186/1471-2105-4-44. BMC Bioinformatics. 2003. PMID: 14499004 Free PMC article.
Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.
Jung S, Swart EC, Minx PJ, Magrini V, Mardis ER, Landweber LF, Eddy SR. Jung S, et al. Nucleic Acids Res. 2011 Sep 1;39(17):7529-47. doi: 10.1093/nar/gkr501. Epub 2011 Jun 28. Nucleic Acids Res. 2011. PMID: 21715380 Free PMC article.
Query-dependent banding (QDB) for faster RNA similarity searches.
Nawrocki EP, Eddy SR. Nawrocki EP, et al. PLoS Comput Biol. 2007 Mar 30;3(3):e56. doi: 10.1371/journal.pcbi.0030056. Epub 2007 Feb 7. PLoS Comput Biol. 2007. PMID: 17397253 Free PMC article.
Hidden Markov model speed heuristic and iterative HMM search procedure.
Johnson LS, Eddy SR, Portugaly E. Johnson LS, et al. BMC Bioinformatics. 2010 Aug 18;11:431. doi: 10.1186/1471-2105-11-431. BMC Bioinformatics. 2010. PMID: 20718988 Free PMC article.
Homologs of small nucleolar RNAs in Archaea.
Omer AD, Lowe TM, Russell AG, Ebhardt H, Eddy SR, Dennis PP. Omer AD, et al. Science. 2000 Apr 21;288(5465):517-22. doi: 10.1126/science.288.5465.517. Science. 2000. PMID: 10775111 Free article.
Noncoding RNA genes identified in AT-rich hyperthermophiles.
Klein RJ, Misulovin Z, Eddy SR. Klein RJ, et al. Proc Natl Acad Sci U S A. 2002 May 28;99(11):7542-7. doi: 10.1073/pnas.112063799. Proc Natl Acad Sci U S A. 2002. PMID: 12032319 Free PMC article.
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
Dowell RD, Eddy SR. Dowell RD, et al. BMC Bioinformatics. 2006 Sep 4;7:400. doi: 10.1186/1471-2105-7-400. BMC Bioinformatics. 2006. PMID: 16952317 Free PMC article.
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