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Year Number of Results
2010 1
2011 5
2012 6
2013 1
2020 0
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10 results
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Page 1
Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.
Kos VN, Desjardins CA, Griggs A, Cerqueira G, Van Tonder A, Holden MT, Godfrey P, Palmer KL, Bodi K, Mongodin EF, Wortman J, Feldgarden M, Lawley T, Gill SR, Haas BJ, Birren B, Gilmore MS. Kos VN, et al. mBio. 2012 May 22;3(3):e00112-12. doi: 10.1128/mBio.00112-12. Print 2012. mBio. 2012. PMID: 22617140 Free PMC article.
Mechanisms and evolution of virulence in oomycetes.
Jiang RH, Tyler BM. Jiang RH, et al. Annu Rev Phytopathol. 2012;50:295-318. doi: 10.1146/annurev-phyto-081211-172912. Annu Rev Phytopathol. 2012. PMID: 22920560 Review.
Hybrid selection for sequencing pathogen genomes from clinical samples.
Melnikov A, Galinsky K, Rogov P, Fennell T, Van Tyne D, Russ C, Daniels R, Barnes KG, Bochicchio J, Ndiaye D, Sene PD, Wirth DF, Nusbaum C, Volkman SK, Birren BW, Gnirke A, Neafsey DE. Melnikov A, et al. Genome Biol. 2011 Aug 11;12(8):R73. doi: 10.1186/gb-2011-12-8-r73. Genome Biol. 2011. PMID: 21835008 Free PMC article.
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries.
Aird D, Ross MG, Chen WS, Danielsson M, Fennell T, Russ C, Jaffe DB, Nusbaum C, Gnirke A. Aird D, et al. Genome Biol. 2011;12(2):R18. doi: 10.1186/gb-2011-12-2-r18. Epub 2011 Feb 21. Genome Biol. 2011. PMID: 21338519 Free PMC article.
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Grabherr MG, et al. Nat Biotechnol. 2011 May 15;29(7):644-52. doi: 10.1038/nbt.1883. Nat Biotechnol. 2011. PMID: 21572440 Free PMC article.
Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification.
Malboeuf CM, Yang X, Charlebois P, Qu J, Berlin AM, Casali M, Pesko KN, Boutwell CL, DeVincenzo JP, Ebel GD, Allen TM, Zody MC, Henn MR, Levin JZ. Malboeuf CM, et al. Nucleic Acids Res. 2013 Jan 7;41(1):e13. doi: 10.1093/nar/gks794. Epub 2012 Sep 8. Nucleic Acids Res. 2013. PMID: 22962364 Free PMC article.
Candidate targets of balancing selection in the genome of Staphylococcus aureus.
Thomas JC, Godfrey PA, Feldgarden M, Robinson DA. Thomas JC, et al. Mol Biol Evol. 2012 Apr;29(4):1175-86. doi: 10.1093/molbev/msr286. Epub 2011 Nov 22. Mol Biol Evol. 2012. PMID: 22114360 Free PMC article.
Independent large scale duplications in multiple M. tuberculosis lineages overlapping the same genomic region.
Weiner B, Gomez J, Victor TC, Warren RM, Sloutsky A, Plikaytis BB, Posey JE, van Helden PD, Gey van Pittius NC, Koehrsen M, Sisk P, Stolte C, White J, Gagneux S, Birren B, Hung D, Murray M, Galagan J. Weiner B, et al. PLoS One. 2012;7(2):e26038. doi: 10.1371/journal.pone.0026038. Epub 2012 Feb 7. PLoS One. 2012. PMID: 22347359 Free PMC article.
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.
Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF. Morowitz MJ, et al. Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1128-33. doi: 10.1073/pnas.1010992108. Epub 2010 Dec 29. Proc Natl Acad Sci U S A. 2011. PMID: 21191099 Free PMC article.
Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data.
Macalalad AR, Zody MC, Charlebois P, Lennon NJ, Newman RM, Malboeuf CM, Ryan EM, Boutwell CL, Power KA, Brackney DE, Pesko KN, Levin JZ, Ebel GD, Allen TM, Birren BW, Henn MR. Macalalad AR, et al. PLoS Comput Biol. 2012;8(3):e1002417. doi: 10.1371/journal.pcbi.1002417. Epub 2012 Mar 15. PLoS Comput Biol. 2012. PMID: 22438797 Free PMC article.