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Experimental and in silico analyses of glycolytic flux control in bloodstream form Trypanosoma brucei.

Albert MA, Haanstra JR, Hannaert V, Van Roy J, Opperdoes FR, Bakker BM, Michels PA. Albert MA, et al. Among authors: haanstra jr. J Biol Chem. 2005 Aug 5;280(31):28306-15. doi: 10.1074/jbc.M502403200. Epub 2005 Jun 14. J Biol Chem. 2005. PMID: 15955817

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Control and regulation of gene expression: quantitative analysis of the expression of phosphoglycerate kinase in bloodstream form Trypanosoma brucei.

Haanstra JR, Stewart M, Luu VD, van Tuijl A, Westerhoff HV, Clayton C, Bakker BM. Haanstra JR, et al. J Biol Chem. 2008 Feb 1;283(5):2495-507. doi: 10.1074/jbc.M705782200. Epub 2007 Nov 8. J Biol Chem. 2008. PMID: 17991737

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Proliferating bloodstream-form Trypanosoma brucei use a negligible part of consumed glucose for anabolic processes.

Haanstra JR, van Tuijl A, van Dam J, van Winden W, Tielens AG, van Hellemond JJ, Bakker BM. Haanstra JR, et al. Int J Parasitol. 2012 Jun;42(7):667-73. doi: 10.1016/j.ijpara.2012.04.009. Epub 2012 May 8. Int J Parasitol. 2012. PMID: 22580731

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Dissecting the catalytic mechanism of Trypanosoma brucei trypanothione synthetase by kinetic analysis and computational modeling.

Leroux AE, Haanstra JR, Bakker BM, Krauth-Siegel RL. Leroux AE, et al. Among authors: haanstra jr. J Biol Chem. 2013 Aug 16;288(33):23751-64. doi: 10.1074/jbc.M113.483289. Epub 2013 Jun 28. J Biol Chem. 2013. PMID: 23814051 Free PMC article.

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In or out? On the tightness of glycosomal compartmentalization of metabolites and enzymes in Trypanosoma brucei.

Haanstra JR, Bakker BM, Michels PA. Haanstra JR, et al. Mol Biochem Parasitol. 2014 Nov;198(1):18-28. doi: 10.1016/j.molbiopara.2014.11.004. Epub 2014 Dec 2. Mol Biochem Parasitol. 2014. PMID: 25476771 Review.

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Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression.

Antwi EB, Haanstra JR, Ramasamy G, Jensen B, Droll D, Rojas F, Minia I, Terrao M, Mercé C, Matthews K, Myler PJ, Parsons M, Clayton C. Antwi EB, et al. Among authors: haanstra jr. BMC Genomics. 2016 Apr 26;17:306. doi: 10.1186/s12864-016-2624-3. BMC Genomics. 2016. PMID: 27118143 Free PMC article.

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Quantitative analysis of amino acid metabolism in liver cancer links glutamate excretion to nucleotide synthesis.

Nilsson A, Haanstra JR, Engqvist M, Gerding A, Bakker BM, Klingmüller U, Teusink B, Nielsen J. Nilsson A, et al. Among authors: haanstra jr. Proc Natl Acad Sci U S A. 2020 May 12;117(19):10294-10304. doi: 10.1073/pnas.1919250117. Epub 2020 Apr 27. Proc Natl Acad Sci U S A. 2020. PMID: 32341162 Free PMC article.

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Network-based selectivity of antiparasitic inhibitors.

Bakker BM, Assmus HE, Bruggeman F, Haanstra JR, Klipp E, Westerhoff H. Bakker BM, et al. Among authors: haanstra jr. Mol Biol Rep. 2002;29(1-2):1-5. doi: 10.1023/a:1020397513646. Mol Biol Rep. 2002. PMID: 12241036 No abstract available.

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The silicon trypanosome: a test case of iterative model extension in systems biology.

Achcar F, Fadda A, Haanstra JR, Kerkhoven EJ, Kim DH, Leroux AE, Papamarkou T, Rojas F, Bakker BM, Barrett MP, Clayton C, Girolami M, Krauth-Siegel RL, Matthews KR, Breitling R. Achcar F, et al. Among authors: haanstra jr. Adv Microb Physiol. 2014;64:115-43. doi: 10.1016/B978-0-12-800143-1.00003-8. Adv Microb Physiol. 2014. PMID: 24797926 Free PMC article. Review.

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Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels.

Fadda A, Ryten M, Droll D, Rojas F, Färber V, Haanstra JR, Merce C, Bakker BM, Matthews K, Clayton C. Fadda A, et al. Among authors: haanstra jr. Mol Microbiol. 2014 Oct;94(2):307-26. doi: 10.1111/mmi.12764. Epub 2014 Sep 15. Mol Microbiol. 2014. PMID: 25145465 Free PMC article.

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