Haldane A - Search Results

1

Influence of multiple-sequence-alignment depth on Potts statistical models of protein covariation.

Haldane A, Levy RM. Haldane A, et al. Phys Rev E. 2019 Mar;99(3-1):032405. doi: 10.1103/PhysRevE.99.032405. Phys Rev E. 2019. PMID: 30999494 Free PMC article.

2

Structural propensities of kinase family proteins from a Potts model of residue co-variation.

Haldane A, Flynn WF, He P, Vijayan RS, Levy RM. Haldane A, et al. Protein Sci. 2016 Aug;25(8):1378-84. doi: 10.1002/pro.2954. Epub 2016 Jun 26. Protein Sci. 2016. PMID: 27241634 Free PMC article.

3

Potts Hamiltonian models of protein co-variation, free energy landscapes, and evolutionary fitness.

Levy RM, Haldane A, Flynn WF. Levy RM, et al. Among authors: haldane a. Curr Opin Struct Biol. 2017 Apr;43:55-62. doi: 10.1016/j.sbi.2016.11.004. Epub 2016 Nov 18. Curr Opin Struct Biol. 2017. PMID: 27870991 Free PMC article. Review.

4

Inference of Epistatic Effects Leading to Entrenchment and Drug Resistance in HIV-1 Protease.

Flynn WF, Haldane A, Torbett BE, Levy RM. Flynn WF, et al. Among authors: haldane a. Mol Biol Evol. 2017 Jun 1;34(6):1291-1306. doi: 10.1093/molbev/msx095. Mol Biol Evol. 2017. PMID: 28369521 Free PMC article.

5

Coevolutionary Landscape of Kinase Family Proteins: Sequence Probabilities and Functional Motifs.

Haldane A, Flynn WF, He P, Levy RM. Haldane A, et al. Biophys J. 2018 Jan 9;114(1):21-31. doi: 10.1016/j.bpj.2017.10.028. Biophys J. 2018. PMID: 29320688 Free PMC article.

6

Epistasis and entrenchment of drug resistance in HIV-1 subtype B.

Biswas A, Haldane A, Arnold E, Levy RM. Biswas A, et al. Among authors: haldane a. Elife. 2019 Oct 8;8:e50524. doi: 10.7554/eLife.50524. Elife. 2019. PMID: 31591964 Free PMC article.

7

A universal scaling law determines time reversibility and steady state of substitutions under selection.

Manhart M, Haldane A, Morozov AV. Manhart M, et al. Among authors: haldane a. Theor Popul Biol. 2012 Aug;82(1):66-76. doi: 10.1016/j.tpb.2012.03.007. Theor Popul Biol. 2012. PMID: 22838027 Free PMC article.

8

Biophysical fitness landscapes for transcription factor binding sites.

Haldane A, Manhart M, Morozov AV. Haldane A, et al. PLoS Comput Biol. 2014 Jul 10;10(7):e1003683. doi: 10.1371/journal.pcbi.1003683. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25010228 Free PMC article.

9

Array programming with NumPy.

Harris CR, Millman KJ, van der Walt SJ, Gommers R, Virtanen P, Cournapeau D, Wieser E, Taylor J, Berg S, Smith NJ, Kern R, Picus M, Hoyer S, van Kerkwijk MH, Brett M, Haldane A, Del Río JF, Wiebe M, Peterson P, Gérard-Marchant P, Sheppard K, Reddy T, Weckesser W, Abbasi H, Gohlke C, Oliphant TE. Harris CR, et al. Among authors: haldane a. Nature. 2020 Sep;585(7825):357-362. doi: 10.1038/s41586-020-2649-2. Epub 2020 Sep 16. Nature. 2020. PMID: 32939066 Free PMC article. Review.

10

To set coronavirus policy, model lives and livelihoods in lockstep.

Haldane A. Haldane A. Nature. 2020 May;581(7809):357. doi: 10.1038/d41586-020-01504-4. Nature. 2020. PMID: 32427964 No abstract available.

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