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SLiM 2: Flexible, Interactive Forward Genetic Simulations.
Haller BC, Messer PW. Haller BC, et al. Mol Biol Evol. 2017 Jan;34(1):230-240. doi: 10.1093/molbev/msw211. Epub 2016 Oct 3. Mol Biol Evol. 2017. PMID: 27702775
Evolutionary Modeling in SLiM 3 for Beginners.
Haller BC, Messer PW. Haller BC, et al. Mol Biol Evol. 2019 May 1;36(5):1101-1109. doi: 10.1093/molbev/msy237. Mol Biol Evol. 2019. PMID: 30590560 Free PMC article.
SLiM 3: Forward Genetic Simulations Beyond the Wright-Fisher Model.
Haller BC, Messer PW. Haller BC, et al. Mol Biol Evol. 2019 Mar 1;36(3):632-637. doi: 10.1093/molbev/msy228. Mol Biol Evol. 2019. PMID: 30517680 Free PMC article.
asymptoticMK: A Web-Based Tool for the Asymptotic McDonald-Kreitman Test.
Haller BC, Messer PW. Haller BC, et al. G3 (Bethesda). 2017 May 5;7(5):1569-1575. doi: 10.1534/g3.117.039693. G3 (Bethesda). 2017. PMID: 28341700 Free PMC article.
Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes.
Haller BC, Galloway J, Kelleher J, Messer PW, Ralph PL. Haller BC, et al. Mol Ecol Resour. 2019 Mar;19(2):552-566. doi: 10.1111/1755-0998.12968. Epub 2019 Feb 21. Mol Ecol Resour. 2019. PMID: 30565882 Free PMC article.
Broken barriers: human-induced changes to gene flow and introgression in animals: an examination of the ways in which humans increase genetic exchange among populations and species and the consequences for biodiversity.
Crispo E, Moore JS, Lee-Yaw JA, Gray SM, Haller BC. Crispo E, et al. Among authors: haller bc. Bioessays. 2011 Jul;33(7):508-18. doi: 10.1002/bies.201000154. Epub 2011 Apr 27. Bioessays. 2011. PMID: 21523794 Review.
Solving the paradox of stasis: squashed stabilizing selection and the limits of detection.
Haller BC, Hendry AP. Haller BC, et al. Evolution. 2014 Feb;68(2):483-500. doi: 10.1111/evo.12275. Epub 2013 Oct 16. Evolution. 2014. PMID: 24102172
The temporal distribution of directional gradients under selection for an optimum.
Chevin LM, Haller BC. Chevin LM, et al. Among authors: haller bc. Evolution. 2014 Dec;68(12):3381-94. doi: 10.1111/evo.12532. Epub 2014 Nov 21. Evolution. 2014. PMID: 25302419
A tale of two morphs: modeling pollen transfer, magic traits, and reproductive isolation in parapatry.
Haller BC, de Vos JM, Keller B, Hendry AP, Conti E. Haller BC, et al. PLoS One. 2014 Sep 11;9(9):e106512. doi: 10.1371/journal.pone.0106512. eCollection 2014. PLoS One. 2014. PMID: 25211280 Free PMC article.
Evolutionary branching in complex landscapes.
Haller BC, Mazzucco R, Dieckmann U. Haller BC, et al. Am Nat. 2013 Oct;182(4):E127-41. doi: 10.1086/671907. Epub 2013 Aug 20. Am Nat. 2013. PMID: 24021409
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