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HMMpTM: improving transmembrane protein topology prediction using phosphorylation and glycosylation site prediction.
Tsaousis GN, Bagos PG, Hamodrakas SJ. Tsaousis GN, et al. Among authors: hamodrakas sj. Biochim Biophys Acta. 2014 Feb;1844(2):316-22. doi: 10.1016/j.bbapap.2013.11.001. Epub 2013 Nov 10. Biochim Biophys Acta. 2014. PMID: 24225132
Is beta-pleated sheet the molecular conformation which dictates formation of helicoidal cuticle?
Iconomidou VA, Willis JH, Hamodrakas SJ. Iconomidou VA, et al. Among authors: hamodrakas sj. Insect Biochem Mol Biol. 1999 Mar;29(3):285-92. doi: 10.1016/s0965-1748(99)00005-3. Insect Biochem Mol Biol. 1999. PMID: 10319442
A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm.
Pasquier C, Promponas VJ, Palaios GA, Hamodrakas JS, Hamodrakas SJ. Pasquier C, et al. Among authors: hamodrakas js, hamodrakas sj. Protein Eng. 1999 May;12(5):381-5. doi: 10.1093/protein/12.5.381. Protein Eng. 1999. PMID: 10360978
An hierarchical artificial neural network system for the classification of transmembrane proteins.
Pasquier C, Hamodrakas SJ. Pasquier C, et al. Among authors: hamodrakas sj. Protein Eng. 1999 Aug;12(8):631-4. doi: 10.1093/protein/12.8.631. Protein Eng. 1999. PMID: 10469822
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.
Promponas VJ, Enright AJ, Tsoka S, Kreil DP, Leroy C, Hamodrakas S, Sander C, Ouzounis CA. Promponas VJ, et al. Bioinformatics. 2000 Oct;16(10):915-22. doi: 10.1093/bioinformatics/16.10.915. Bioinformatics. 2000. PMID: 11120681
PRED-CLASS: cascading neural networks for generalized protein classification and genome-wide applications.
Pasquier C, Promponas VJ, Hamodrakas SJ. Pasquier C, et al. Among authors: hamodrakas sj. Proteins. 2001 Aug 15;44(3):361-9. doi: 10.1002/prot.1101. Proteins. 2001. PMID: 11455609
CoPreTHi: a Web tool which combines transmembrane protein segment prediction methods.
Promponas VJ, Palaios GA, Pasquier CM, Hamodrakas JS, Hamodrakas SJ. Promponas VJ, et al. Among authors: hamodrakas js, hamodrakas sj. In Silico Biol. 1999;1(3):159-62. In Silico Biol. 1999. PMID: 11471236
A novel tool for the prediction of transmembrane protein topology based on a statistical analysis of the SwissProt database: the OrienTM algorithm.
Liakopoulos TD, Pasquier C, Hamodrakas SJ. Liakopoulos TD, et al. Among authors: hamodrakas sj. Protein Eng. 2001 Jun;14(6):387-90. doi: 10.1093/protein/14.6.387. Protein Eng. 2001. PMID: 11477216
A Web-based classification system of DNA-binding protein families.
Karmirantzou M, Hamodrakas SJ. Karmirantzou M, et al. Among authors: hamodrakas sj. Protein Eng. 2001 Jul;14(7):465-72. doi: 10.1093/protein/14.7.465. Protein Eng. 2001. PMID: 11522919
A structural model of the chitin-binding domain of cuticle proteins.
Hamodrakas SJ, Willis JH, Iconomidou VA. Hamodrakas SJ, et al. Insect Biochem Mol Biol. 2002 Nov;32(11):1577-83. doi: 10.1016/s0965-1748(02)00079-6. Insect Biochem Mol Biol. 2002. PMID: 12530225
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